| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,584,229 – 7,584,329 |
| Length | 100 |
| Max. P | 0.645608 |
| Location | 7,584,229 – 7,584,329 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 68.02 |
| Shannon entropy | 0.51566 |
| G+C content | 0.50075 |
| Mean single sequence MFE | -33.83 |
| Consensus MFE | -12.66 |
| Energy contribution | -11.14 |
| Covariance contribution | -1.52 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.645608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7584229 100 + 27905053 GCUUUUAGAGAG--CGGUGGAGAGGAUCCGAAAGAGUGGGAGUA-GGCUCGUAGGGAGGAAGAGGAAGAUAAGGUGGGUCCGCUUCUUUCUCGCUCUCUGUUA .....(((((((--(..((((.....))))......((.(((..-..))).))..((((((((((..(((.......)))..))))))))))))))))))... ( -34.40, z-score = -0.80, R) >droSim1.chr3R 13706193 102 - 27517382 GCUUUUAGAGAGAGCGGUGGAGAGGAGCCGAAAGAGUGGGAGUA-GGCGCGUAGGGAGGAAGAUGAAGAUAAGGUGGGUCCGCUUCUUUCUCGCUCUCUUUUA ......((((((((((..(((((((((((....)....(((.(.-.((.(......................))).).))))))))))))))))))))))).. ( -31.95, z-score = -0.04, R) >droSec1.super_0 6738994 102 - 21120651 GCUUUUAGAGAGAGCGGUGGAGAGGAUCCGAAAGAGUGGGAGUA-GGCGCGUAGGGAGGAAGAUGAAGAUAAGGUGGGUCCGCUUCUUUCUCGCUCUCUUUUA ......(((((((((((..((((((.(((......(((......-..))).......)))............((.....)).))))))..))))))))))).. ( -30.62, z-score = 0.29, R) >dp4.chr2 5020889 93 - 30794189 GCUUUUCGCAGA-------GAGAGUGAAAGAAAGAGAGAGAGCCCAAUUUGUGAGAGCGAGAGCGAACAGCAGAUAAG---GCGUAUCUCUCUUUCGGUAUUA (((((((((...-------....))))))((((((((((..(((..((((((....((....)).....))))))..)---))...))))))))))))).... ( -36.10, z-score = -4.68, R) >droPer1.super_6 1150853 93 + 6141320 GCUUUUCGCAGA-------GAGAGUGAAAGAAAGAGAGAGAGCCCAAUUUGUGAGAGCGAGAGCGAACAGCAGAUAAG---GCGUAUCUCUCUUUCGGUAUUA (((((((((...-------....))))))((((((((((..(((..((((((....((....)).....))))))..)---))...))))))))))))).... ( -36.10, z-score = -4.68, R) >consensus GCUUUUAGAGAG__CGGUGGAGAGGAACCGAAAGAGUGGGAGUA_GGCUCGUAGGGAGGAAGACGAAGAUAAGGUGGGUCCGCUUCUUUCUCGCUCUCUAUUA .(((((.............))))).........(((((((((............(((((.......................))))))))))))))....... (-12.66 = -11.14 + -1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:30 2011