| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,580,033 – 7,580,143 |
| Length | 110 |
| Max. P | 0.559531 |
| Location | 7,580,033 – 7,580,143 |
|---|---|
| Length | 110 |
| Sequences | 7 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 83.51 |
| Shannon entropy | 0.30483 |
| G+C content | 0.41319 |
| Mean single sequence MFE | -19.54 |
| Consensus MFE | -11.38 |
| Energy contribution | -11.10 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7580033 110 + 27905053 UAUUAUCCAUAAUAAGGUCCUCCCUUAUAUACCCACCGUUAUCGUCCUGUGGCUUCGAUUUCUCCACAUUGGUCUCGCCAACUUGCUCCACGUAAGCUUUCGAUAGCUUU ...........((((((.....)))))).........(((((((...(((((...........)))))((((.....))))(((((.....)))))....)))))))... ( -22.30, z-score = -2.68, R) >droPer1.super_6 1147084 104 + 6141320 UAUUAUCCAUAAUAAGAUC-UUUCUCAUA-----AACAUAACCAUUCUCUGGCUGCUGUUCGAUUUCAUUGGCUUCGCCAAAUUGUUCCACUUUAGCUUUCAAUUGGUUU ...................-.........-----.....(((((......(((((..((..((.....(((((...))))).....)).))..)))))......))))). ( -16.00, z-score = -1.22, R) >dp4.chr2 5017136 104 - 30794189 UAUUAUCCAUAAUAAGAUC-UUUCUCAUA-----AACAUAACCAUUCUCUGGCUGCUGUUCGAUUUCAUUGGCUUCGCCAAAUUGUUCCACUUUAGCUUUCAAUUGGUUU ...................-.........-----.....(((((......(((((..((..((.....(((((...))))).....)).))..)))))......))))). ( -16.00, z-score = -1.22, R) >droEre2.scaffold_4770 3709525 110 - 17746568 UUAUAUCCAUAAUAAGGUCAUCCCUUAUAUACCCACCGUUAUCGUCCUGUGGCUUCGAUUUCUCCACAUUGGUCUCGCCAACUUGCUCCACGUAAGCUUUCGAUAGCUUU ...........((((((.....)))))).........(((((((...(((((...........)))))((((.....))))(((((.....)))))....)))))))... ( -22.30, z-score = -2.64, R) >droYak2.chr3R 11993405 110 - 28832112 UAUUAUCCAUAAUAAGGUCCUCCCUUAUAUACCCACCGUUAUCGUCCUGUGGCUUCGAUUUCUCCACAUUGGUCUCGCCAACUUGCUCCACGUAAGCUUUCGUUAGCUUU ...........((((((.....)))))).........((((.((...(((((...........)))))((((.....))))(((((.....)))))....)).))))... ( -17.80, z-score = -1.26, R) >droSec1.super_0 6734761 110 - 21120651 UAUUAUCCAUAAUAAGGUCCUCCCUUAUAUAUCCACCGUUAUCGUCCUGUGGCUUCGAUUUCUCCACAUUGGUCUCGCCAACUUGCUCCACAUAAGCUUUCGAUAGCUUU ...........((((((.....)))))).........(((((((...(((((...........)))))((((.....))))...(((.......)))...)))))))... ( -20.10, z-score = -2.20, R) >droSim1.chr3R 13701970 110 - 27517382 UAUUAUCCAUAAUAAGGUCCUCCCUUAUAUACCCACCGUUAUCGUCCUGUGGCUUCGAUUUCUCCACAUUGGUCUCGCCAACUUGCUCCACGUAAGCUUUCGAUAGCUUU ...........((((((.....)))))).........(((((((...(((((...........)))))((((.....))))(((((.....)))))....)))))))... ( -22.30, z-score = -2.68, R) >consensus UAUUAUCCAUAAUAAGGUCCUCCCUUAUAUACCCACCGUUAUCGUCCUGUGGCUUCGAUUUCUCCACAUUGGUCUCGCCAACUUGCUCCACGUAAGCUUUCGAUAGCUUU ...........((((((.....)))))).........((((.((......(((((.............(((((...)))))............)))))..)).))))... (-11.38 = -11.10 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:29 2011