| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,535,348 – 7,535,445 |
| Length | 97 |
| Max. P | 0.622468 |
| Location | 7,535,348 – 7,535,445 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 70.64 |
| Shannon entropy | 0.51256 |
| G+C content | 0.45496 |
| Mean single sequence MFE | -21.66 |
| Consensus MFE | -11.50 |
| Energy contribution | -12.66 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.622468 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7535348 97 - 27905053 UAGAGCAGAAGCUGGAGCUGAAGCUGCAGGAUGCUGAAUGGAAGGAGUGGGCGUGGGUAAUGAGUUAAAUUAUUAUGCAAACGACGGCUUCAUGUCU ...((((....(((.(((....))).)))..))))((...((((..((.(...((.(((((((......))))))).))..).))..))))...)). ( -29.10, z-score = -2.39, R) >droEre2.scaffold_4770 3664868 84 + 17746568 ------------UGAAGCUAAAGCUGC-AGAAGCUGAAUAGAGGGAGUGAGCGUGGGUAAUGAGUUAAAUUAUUAUGCAAACGACGGCUCCAUGUCU ------------.....(((.((((..-...))))...)))..(((((...((((.(((((((......))))))).)..)))...)))))...... ( -20.50, z-score = -0.93, R) >droSec1.super_0 6690292 91 + 21120651 ------UGAAGCUGGAGCUGAAGCUGCUGGAUGCUGAAUGGAGGGAGUGGGCGUGGGUAAUGAGUUAAAUUAUUAUGCAAACGACGGCUCCAUGUCU ------.((...((((((((.(((........)))...........((..((((((.((((.......))))))))))..))..))))))))..)). ( -25.40, z-score = -1.37, R) >droSim1.chr3R 13656739 76 + 27517382 ------------------UGAAGCU---AGAUGCUGAAUGGAGGGAGUGGGCGUGGGUAAUGAGUUAAAUUAUUAUGCAAACGACGGCUCCAUGUCU ------------------...(((.---....)))((((((((...((.(...((.(((((((......))))))).))..).))..)))))).)). ( -21.10, z-score = -2.14, R) >droVir3.scaffold_12855 4665570 79 + 10161210 --------UUACGGGAAGAGGAGAUGCUCGGGGCUAGUUGCAAUCCUACGAAAUG--UAAUGAGUUAAAUUAUUAUGCAAACGAAGUCU-------- --------...((((...........))))(((((..((((..((....))...(--((((((......)))))))))))....)))))-------- ( -12.20, z-score = 0.84, R) >consensus ___________CUGGAGCUGAAGCUGC_AGAUGCUGAAUGGAGGGAGUGGGCGUGGGUAAUGAGUUAAAUUAUUAUGCAAACGACGGCUCCAUGUCU .....................(((........)))........(((((.(...((.(((((((......))))))).)).....).)))))...... (-11.50 = -12.66 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:20 2011