| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,522,021 – 7,522,122 |
| Length | 101 |
| Max. P | 0.599882 |
| Location | 7,522,021 – 7,522,122 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 57.31 |
| Shannon entropy | 0.71976 |
| G+C content | 0.30040 |
| Mean single sequence MFE | -17.52 |
| Consensus MFE | -7.44 |
| Energy contribution | -5.28 |
| Covariance contribution | -2.16 |
| Combinations/Pair | 1.78 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599882 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7522021 101 - 27905053 ---UAUCAUAGUAGUUGUGUUGUUUUCAGUUUAAAAAUAUCGUAAUGG----CAUACAUCAA-------UGCGGUUGUUAUUCCUUGCCAUUGCAUA-AAAGCAACACUUUUAUUC--- ---......(((((..((((((((((..(((....)))...(((((((----((.....(((-------(...))))........)))))))))...-))))))))))..))))).--- ( -23.82, z-score = -3.00, R) >droSim1.chr3R 13643259 101 + 27517382 ---UACCAUAGUAGUUGUGUUGUUUUCAGUUUAUAAAUAUCUUAAUGG----UAUACCUCAA-------UGCGGUUGUUAUUCCUUGCCAUUGCAUA-AAAGCAGCAUUUUUAUUU--- ---......(((((..((((((((((..........(((((.....))----)))......(-------((((((.((........)).))))))).-))))))))))..))))).--- ( -21.00, z-score = -1.93, R) >droSec1.super_0 6677267 79 + 21120651 -----------------------UAUCAUGGUAAUGGUAUA--AAUGG----UGUACCUCAA-------UGCGGUUGUUAUUCCUUGCCAUUGCAUA-AAAGCAGCAUUUUUAUUU--- -----------------------((((((....)))))).(--((((.----(((......(-------((((((.((........)).))))))).-...))).)))))......--- ( -15.30, z-score = 0.01, R) >droYak2.chr3R 11932359 101 + 28832112 ---------AAUUGUAGUAUCG-UUUCAUUUUAUAAAUAUUAUAGUGGUAUAUAUACUUCAA-------UGCGGUUGUUAUUCCCUGCCAUUGCAUA-AAAGCAGCAUUUUUAUUUGUA ---------.((((.(((((..-..(((((.((.......)).))))).....))))).)))-------)(((((...........)))..(((...-...)))))............. ( -13.70, z-score = 0.68, R) >droVir3.scaffold_12855 5465585 108 - 10161210 UUCCAUGUUAAUUUAUCUGUCAGUUUUGACAUAAAAGACACAAAAUGCUGCUAGGAAUUGGAAAUAUUCAGCAAUUAGAAUUCCUUAUUCUUAUAUACAAUUUAAUAU----------- ....(((((((......((((......))))....................(((((((.(((...((((........)))))))..)))))))........)))))))----------- ( -13.80, z-score = 0.31, R) >consensus ____A___UAAUAGUUGUGUCG_UUUCAGUUUAAAAAUAUCAUAAUGG____UAUACCUCAA_______UGCGGUUGUUAUUCCUUGCCAUUGCAUA_AAAGCAGCAUUUUUAUUU___ .........................................................................((((((......(((....))).....))))))............. ( -7.44 = -5.28 + -2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:19 2011