| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,504,811 – 7,504,918 |
| Length | 107 |
| Max. P | 0.711992 |
| Location | 7,504,811 – 7,504,918 |
|---|---|
| Length | 107 |
| Sequences | 8 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 79.17 |
| Shannon entropy | 0.40522 |
| G+C content | 0.61757 |
| Mean single sequence MFE | -22.01 |
| Consensus MFE | -14.12 |
| Energy contribution | -14.26 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.711992 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7504811 107 - 27905053 CACUUUCGAUAGCAACGGCGUCGCCGAGCACCACCUGCACCACAACCACAACUCCACAUCGUCCGCCAGCGGACUGCUCCACGACCCACCCAUGGCCUCGCCCUCCC ................((((..((((.(((.....)))......................(((((....)))))..................))))..))))..... ( -25.00, z-score = -1.77, R) >droSim1.chr3R 13625654 107 + 27517382 CACUUUCGAUAGCAACGGCGUCGCCGAACACCACCUGCACCACAACCACAACUCCACAUCGUCCGCCAGCGGACAGCUCCACGACCCACCCAUGGCCUCGCCCUCCC ................((((..((((.........((.....))................(((((....)))))..................))))..))))..... ( -21.50, z-score = -1.18, R) >droSec1.super_0 6660090 107 + 21120651 CACUUUCGAUAGCAACGGCGUCGCCGAACACCACCUGCACCACAACCACAACUCCACAUCGUCCGCCAGCGGACAGCUCCACGACCCACCCAUGGCCUCGCCCUCCC ................((((..((((.........((.....))................(((((....)))))..................))))..))))..... ( -21.50, z-score = -1.18, R) >droYak2.chr3R 11915241 107 + 28832112 CACUUUCGAUAGCAACGGCGUCGCCGAGCACCACCUGCACCACAACCACAACUCCACAUCGUCCGCCAGCGGACAGUUCCACGACCCACCCAUGGCCUCGCCCUCCC ................((((..((((.(((.....)))......................(((((....)))))..................))))..))))..... ( -25.50, z-score = -2.14, R) >droEre2.scaffold_4770 3632822 107 + 17746568 CACUUUCGAUAGCAACGGCGUCGCCGAGCACCACCUGCACCACAACCACAACUCCACAUCGUCCGCCAGCGGACAGCUCCAAGACCCACCCAUGGCCUCGCCCUCCC ................((((..((((.(((.....)))......................(((((....)))))..................))))..))))..... ( -25.50, z-score = -2.21, R) >droAna3.scaffold_13340 13969952 104 - 23697760 CACUUUCGAUAGUAACGGCGACACCGAGCACUACCAGAACCAACACUACCACAGCACCACGUCCGGCGGCGGGCA---UCACAACCUUUCCAUGGCCUCGCCCUCCC .(((......)))...(((((..(((.((......((........))......)).....(((((....))))).---..............)))..)))))..... ( -18.90, z-score = 0.97, R) >dp4.chr2 4935708 89 + 30794189 CACUUUCGAUAGCAACGGCGACGCCG---------------AACACAAUAACUACACCACUUCUAACAGCGGCCA---UCGCAACAGCUCAAUGGCCUCGCCCUCUC .......((..((..((((...))))---------------...........................(.(((((---(.((....))...)))))).)))..)).. ( -19.10, z-score = -2.03, R) >droPer1.super_6 1076984 89 - 6141320 CACUUUCGAUAGCAACGGCGACGCCG---------------AACACAAUAACUACACCACUUCUAACAGCGGCCA---UCGCAACAGCUCAAUGGCCUCGCCCUCUC .......((..((..((((...))))---------------...........................(.(((((---(.((....))...)))))).)))..)).. ( -19.10, z-score = -2.03, R) >consensus CACUUUCGAUAGCAACGGCGUCGCCGAGCACCACCUGCACCACAACCACAACUCCACAUCGUCCGCCAGCGGACAGCUCCACGACCCACCCAUGGCCUCGCCCUCCC ................((((..((((..................................(((((....)))))........(.....)...))))..))))..... (-14.12 = -14.26 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:19 2011