Locus 9586

Sequence ID	dm3.chr3R
Location	7,483,549 – 7,483,639
Length	90
Max. P	0.970542

overview

Window 3

Location	7,483,549 – 7,483,639
Length	90
Sequences	4
Columns	90
Reading direction	reverse
Mean pairwise identity	65.00
Shannon entropy	0.58342
G+C content	0.28542
Mean single sequence MFE	-17.38
Consensus MFE	-6.45
Energy contribution	-8.82
Covariance contribution	2.38
Combinations/Pair	1.35
Mean z-score	-2.44
Structure conservation index	0.37
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.83
SVM RNA-class probability	0.970542
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 7483549 90 - 27905053
UUCUUCAUUAUCUAGAUUUGGUUGGUAAAAUGCUAAGUCCCUAAUGAUAUUUAGCAUUCUUUCGAGCUAAAUUUAUUUCAUUAGUAUUUC
............(((((((((((.(...((((((((((..(....)..))))))))))....).)))))))))))............... ( -19.50, z-score =  -3.06, R)
>droSim1.chr3R 13604864 90 + 27517382
UUCUUCAUUAUCUAGUUUUGCUUGGUAAAAUGUUAAAUUCCCCAAGAUAUUUAGCAUUCUUUCGAGCUAACUUUAUUUCAGUAGUAUUUC
.............((((..((((((...((((((((((((.....)).))))))))))...)))))).)))).................. ( -16.30, z-score =  -2.85, R)
>droSec1.super_0 6638726 90 + 21120651
UUCUUCAUUAUCUAGUUUUGCUUGGUAAAAUGGUAAAUUCCCCAAGAUAUUUAGCAUUAUUUCGAGCUAACUUUAUAACAGGAGUAUUUC
..((((.((((..((((..((((((...((((.(((((((.....)).))))).))))...)))))).))))..))))..))))...... ( -18.80, z-score =  -2.22, R)
>droAna3.scaffold_13340 13946246 80 - 23697760
----UCAUUCAAGAGUCUUCAACUCU----UGAUGACUUGGGAAGAGUAACUAAAACUACUUAAAUAAAAGAUUUCCUUAAAUAUAUU--
----((((.(((((((.....)))))----))))))...(((((((((.......))).(((......))).))))))..........-- ( -14.90, z-score =  -1.64, R)
>consensus
UUCUUCAUUAUCUAGUUUUGCUUGGUAAAAUGAUAAAUUCCCAAAGAUAUUUAGCAUUAUUUCGAGCUAACUUUAUUUCAGUAGUAUUUC
............(((((((((((((...((((((((((..........))))))))))...)))))).)))))))............... ( -6.45 =  -8.82 +   2.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:16 2011