| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,483,240 – 7,483,337 |
| Length | 97 |
| Max. P | 0.608986 |
| Location | 7,483,240 – 7,483,337 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 82.53 |
| Shannon entropy | 0.33099 |
| G+C content | 0.49981 |
| Mean single sequence MFE | -25.99 |
| Consensus MFE | -15.84 |
| Energy contribution | -16.53 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608986 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 7483240 97 + 27905053 GAAAGCUG--CCGGCGAAGGCCGCAGACAGCAAUUUAAUUAGAGGUUACUUAGCCAAAGACGCCGAGACGGAGGCAACAAUUGUUGCAGCAACAGAUGG ....((((--(((((....)))).....(((((((........((((....))))......(((........)))...))))))))))))......... ( -29.80, z-score = -2.54, R) >droSim1.chr3R 13604550 96 - 27517382 AAAAACUG--CCGGCGAAGGCCGCAUACAGCAAUUAAAUUAAAGGUUACUUAUCCAAAGACACCGAGACGGAGGCA-GCAUUGUUGCAGCAACAGAUGG .....(((--(((((....)))((.....))............(((..(((.....)))..)))........))))-)((((((((...))))).))). ( -23.20, z-score = -1.26, R) >droSec1.super_0 6638410 97 - 21120651 GAAAGCUG--CCGGCGAAGGCUGCAGACAGCAAUUUAAUUAGAGGUUACUUAGCCAAAGACGCCGAGACGGAGGCAAGAAUUGUUGCAGCAACAGAUGG ....((((--(((((....)))).....((((((((.......((((....))))......(((........)))..)))))))))))))......... ( -29.50, z-score = -2.34, R) >droYak2.chr3R 11893159 97 - 28832112 GAAAGCGG--CCGGCGAAGGCCGCAGACAGCUAUUUAAUUAGAGGUUACUUAGCCAAAGACGCCGCGACGGAGGCAACAAUGGUUGCAAAUACACAUGG ....((((--(((((....))))......((((..((((.....))))..)))).......))))).......(((((....)))))............ ( -30.30, z-score = -2.27, R) >droEre2.scaffold_4770 3610886 97 - 17746568 GAAAGCUG--CCGGCGAAGGCCGCAGACAACAAUUUAAUUAGAGGUUACUUAGCCAAAGACGCCGCGACGGAGGCAACAAUGGUUGAAACUACAGAUAG ....((((--(.(((....))))))).).............(.((((..(((((((..(..(((........)))..)..))))))))))).)...... ( -26.60, z-score = -2.30, R) >droAna3.scaffold_13340 13945945 90 + 23697760 GAAAGCUGGCCCGACGAAGGCCGCCGACAACAAUUUAAUUAGAGGUUAGUUAGCGAAGA--GCUGCCACAGAACACACAAUAGUUGCAACAG------- ...((((((((.......))))((..(((((..((.....))..))).))..))....)--)))((.((.............)).)).....------- ( -16.52, z-score = -0.10, R) >consensus GAAAGCUG__CCGGCGAAGGCCGCAGACAGCAAUUUAAUUAGAGGUUACUUAGCCAAAGACGCCGAGACGGAGGCAACAAUUGUUGCAACAACAGAUGG ...........((((....))))....((((((((........((((....))))......(((........)))...))))))))............. (-15.84 = -16.53 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:15 2011