| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,469,906 – 7,469,967 |
| Length | 61 |
| Max. P | 0.748069 |
| Location | 7,469,906 – 7,469,967 |
|---|---|
| Length | 61 |
| Sequences | 3 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 79.35 |
| Shannon entropy | 0.27695 |
| G+C content | 0.42416 |
| Mean single sequence MFE | -8.30 |
| Consensus MFE | -8.21 |
| Energy contribution | -7.77 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.22 |
| Mean z-score | -0.70 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.748069 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7469906 61 - 27905053 AAGCCAACUGAUA--UCCUCUUCCCUUCUGCCCCUUUGUAUAUCCAUAAGAUGGGCAAAUAAU .............--.............(((((.(((((......)))))..)))))...... ( -8.30, z-score = -0.43, R) >droSim1.chr3R 13592323 58 + 27517382 ---GAAACUUAUA--UCCUCUUCUCUUCUGCCCCUUUGUAUAUCCAUAAGAUGGGCAAGUAAU ---..........--.............(((((.(((((......)))))..)))))...... ( -8.30, z-score = -0.78, R) >droSec1.super_0 6625266 60 + 21120651 ---GAAACUUAUACCCCCUCCUCUCCUCCGCCCCUUUAUAUCCCAGUAAGAUGGGCAAGUAAU ---..........................((((.(((((......)))))..))))....... ( -8.30, z-score = -0.90, R) >consensus ___GAAACUUAUA__UCCUCUUCUCUUCUGCCCCUUUGUAUAUCCAUAAGAUGGGCAAGUAAU .............................((((.(((((......)))))..))))....... ( -8.21 = -7.77 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:13 2011