| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,467,715 – 7,467,824 |
| Length | 109 |
| Max. P | 0.748707 |
| Location | 7,467,715 – 7,467,824 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 93.59 |
| Shannon entropy | 0.10878 |
| G+C content | 0.47516 |
| Mean single sequence MFE | -29.73 |
| Consensus MFE | -28.52 |
| Energy contribution | -28.76 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.748707 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7467715 109 - 27905053 GUAUCUGAAAUAGUGUUUUGUGCAAGCCGCACAAAUUCAUAUCUCAUACCAGUCAGCAAUUCAGCCCUGCUCCCAAUUGUUGCGGCUGGUGUUGCAAGCGGU--CCGCAGA ...((((.....(((.(((((((.....)))))))..))).......(((.((..((((((((((((.((........)).).)))))).)))))..)))))--...)))) ( -31.60, z-score = -1.35, R) >droSim1.chr3R_random 494300 108 - 1307089 GUAUCUGAAAUAA-GUUUUGUGCAACCCGCACAAAUUCAUAUCUCAUACCAGUCAGCAAUUCAGCCCUGCUCCCAAUUGUUGCGGCUGGUGUUGCAAGCGGU--CCGCAGA ...((((......-..(((((((.....)))))))............(((.((..((((((((((((.((........)).).)))))).)))))..)))))--...)))) ( -29.90, z-score = -1.65, R) >droSec1.super_0 6623125 108 + 21120651 GUAUCUGAAAUAA-GUUUUGUGCAACCCGCACAAAUUCAUAUCUCAUACCAGUCAGCAAUUCAGCCCUGCUCCCAAUUGUUGCGGCUGGUGUUGCAAGCGGU--CCGCAGA ...((((......-..(((((((.....)))))))............(((.((..((((((((((((.((........)).).)))))).)))))..)))))--...)))) ( -29.90, z-score = -1.65, R) >droYak2.chr3R 11877609 110 + 28832112 GUAGCUGAAAUAA-GUUUUGUGCAACGCGCACAAAUUCAUAUCUCAUAACAGUCAGCAAUUCAGCCCCGCUCCCAAUUGUUGCGGCUGGUGUUGCAAGCAGUAUACGCAGA (((((((......-..(((((((.....)))))))....................((((((((((((.((........)).).)))))).)))))...)))).)))..... ( -29.30, z-score = -0.79, R) >droEre2.scaffold_4770 3595310 108 + 17746568 GUUGCUUAAAUAA-GUUUUGUGCAUCGCGUACAAAUUCAUAUCUCAUAACAGUCAGCAAUUCAGCCCCGCUCCCAAUUGUUGCGGCUGGUGUUGCAAGCGGU--ACGCAGA (.(((.((((...-..)))).))).)((((((...................((..((((((((((((.((........)).).)))))).)))))..)).))--))))... ( -27.95, z-score = -0.62, R) >consensus GUAUCUGAAAUAA_GUUUUGUGCAACCCGCACAAAUUCAUAUCUCAUACCAGUCAGCAAUUCAGCCCUGCUCCCAAUUGUUGCGGCUGGUGUUGCAAGCGGU__CCGCAGA .....(((.(((....(((((((.....)))))))....))).))).........((((((((((((.((........)).).)))))).)))))..(((.....)))... (-28.52 = -28.76 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:13 2011