| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,464,333 – 7,464,435 |
| Length | 102 |
| Max. P | 0.666761 |
| Location | 7,464,333 – 7,464,435 |
|---|---|
| Length | 102 |
| Sequences | 9 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 68.28 |
| Shannon entropy | 0.60334 |
| G+C content | 0.38186 |
| Mean single sequence MFE | -21.57 |
| Consensus MFE | -9.36 |
| Energy contribution | -9.41 |
| Covariance contribution | 0.05 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.666761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7464333 102 + 27905053 -CUUUUCAAGCGCUUAAUUUCUUAAUUUUAUGCAAAUUUCA---UUAGCGAAUCUCGCUCGCU----GGGCGGAAGCG-----CGUUUUGCAUAUUAAGUUCUC--AUUCUGGGACG -...................(((((...((((((((.....---(((((((.......)))))----))(((....))-----)..))))))))))))).((((--.....)))).. ( -23.40, z-score = -0.72, R) >droSim1.chr3R 13583693 102 - 27517382 -CUUUUCAGGCGCUUAAUUUCUUAAUUUUAUGCAAAUUUCA---UUAGCGAAUCUCGCUCGCU----GGGCGGAAGCG-----CGUUUUGCAUAUUAAGUUCUC--AUUCUGGGACG -..(..((((..........(((((...((((((((.....---(((((((.......)))))----))(((....))-----)..))))))))))))).....--..))))..).. ( -25.13, z-score = -1.20, R) >droSec1.super_0 6619902 102 - 21120651 -CUUUUCAGGCGCUUAAUUUCUUAAUUUUAUGCAAAUUUCA---UUAGCGAAUCUCGCUCGCU----GGGCGGAAGCG-----CGUUUUGCAUAUUAAGUUCUC--AUUCUGGGACG -..(..((((..........(((((...((((((((.....---(((((((.......)))))----))(((....))-----)..))))))))))))).....--..))))..).. ( -25.13, z-score = -1.20, R) >droYak2.chr3R 11874216 106 - 28832112 -CUUUCCAGGGGCUUAAUUUCUUAGUUUUAUGCAAAUUUCA---UUAGCGAAUCUCGCUCGCUCGCUGGGCGGAAACG-----CGUUUUGCAUAUUAAGUUCUC--AUUCUGCGACG -...(((((((((((((...........((((((((.....---(((((((...........)))))))(((....))-----)..))))))))))))))))..--...))).)).. ( -27.10, z-score = -1.27, R) >droEre2.scaffold_4770 3591685 102 - 17746568 -CUUUUCAGGGGCUUAAUUUCUUAGUUUUAUGCAAAUUUCA---UUAGCGAAUCUCGCUCGCU----GGGCGGAAACG-----CGUUUUGCAUAUUAAGUUCUC--AUUCUGCGACG -.......(((((((((...........((((((((.....---(((((((.......)))))----))(((....))-----)..))))))))))))))))).--........... ( -27.50, z-score = -2.32, R) >droAna3.scaffold_13340 13928045 102 + 23697760 CUCCUCGAGCAACUUUAUUUCUUAAUUUUAUGCUAAUUUCA---UUGGCGAAUCUCGCUCGCC----GGGCGGAAACG-----CUUUUUGCAUAUUAA-UUCUC--ACUCUUGUCAC ......(((..............((((.(((((........---..(((((.......)))))----(((((....))-----)))...)))))..))-)))))--........... ( -21.33, z-score = -2.14, R) >dp4.chr2 20610517 96 + 30794189 ------------CUUAAUUUUAUAUCUGUAUGCAAAUUUUUCAUUUGGCGAAUCUCGUUCGUUC-UGGGGCGGAAACGAAACGCUUUUUGCAUAUUAAAUUCUC--AUUCU------ ------------...............(((((((((..........((((..((...((((((.-...))))))...))..)))).))))))))).........--.....------ ( -18.30, z-score = -1.66, R) >droVir3.scaffold_12855 5378660 88 + 10161210 -------------UAUUUUGUUUGGAAUUGCUUAAUUUUCAGAUUUUAUGUAAAU--UUCAU-------GCGGAAACG-----CUUUUUGCAUAUUUAAUGUUU-GAUUCAAGUCA- -------------................((((.....((((((..((((((((.--.....-------(((....))-----)..))))))))......))))-))...))))..- ( -16.60, z-score = -1.27, R) >droMoj3.scaffold_6540 30437028 90 - 34148556 -------------UUUUUCUGCUGGCAUUGCCUAAUUUUCAAAGUUUAUGUAAAU--UUCAUU------GCGGAAACA-----CUUUUUGCAUAUUUAAUUUCUCGAUUCUUCUCA- -------------..(((((((.(((...))).........((((((....))))--))....------)))))))..-----.................................- ( -9.60, z-score = 0.25, R) >consensus _CUUUUCAGG_GCUUAAUUUCUUAAUUUUAUGCAAAUUUCA___UUAGCGAAUCUCGCUCGCU____GGGCGGAAACG_____CGUUUUGCAUAUUAAGUUCUC__AUUCUGGGACG ............................((((((((..........(((((.......))))).......((....))........))))))))....................... ( -9.36 = -9.41 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:12 2011