| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,443,844 – 7,443,939 |
| Length | 95 |
| Max. P | 0.513756 |
| Location | 7,443,844 – 7,443,939 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 91.80 |
| Shannon entropy | 0.13991 |
| G+C content | 0.54894 |
| Mean single sequence MFE | -31.44 |
| Consensus MFE | -23.98 |
| Energy contribution | -24.98 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513756 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7443844 95 - 27905053 UCACUCCCUG-CCACAGUGGUGGCCAGUGAUUAAGGGCACACUCCUGCCCACCGGACACCGAAAUUGUUGUUUUCCCGGU----AAAAAAGCCGUGUCCA (((((....(-((((....))))).)))))....(((((......)))))...((((((.((((.......))))..(((----......))))))))). ( -34.60, z-score = -2.76, R) >droSim1.chr3R 13563155 95 + 27517382 UCGCUCCCUG-CCACAGUGGUGGCCAGUGAUUAAGGGCACACUCCUGCCCACCGGACACCGAAAUUGUUGUUUUCCCGGU----AAAAAAGCCGUGUCCA (((((....(-((((....))))).)))))....(((((......)))))...((((((.((((.......))))..(((----......))))))))). ( -34.20, z-score = -2.45, R) >droSec1.super_0 6599389 97 + 21120651 UCGCUCCCUG-CCACAGUGGUGGCCAGUGAUUAAGGGCACACUCCUGCCCACCGGACACCGAAAUUGUUGUUUUCCCGGU--AAAAAAAAGCCGUGUCCA (((((....(-((((....))))).)))))....(((((......)))))...((((((.((((.......))))..(((--........))))))))). ( -34.00, z-score = -2.52, R) >droYak2.chr3R 11853017 100 + 28832112 UCGCUCCCUGACAACAGUGGUGGCCAGUGAUUAAGGGCACACUCCUGCCCACCGGACACCCAAAUUGUUGUUUUCCCGGUAAAAAAAAAACCCGUGUCCA ..((((((((....))).)).)))..........(((((......)))))...((((((.(((....))).......(((.........))).)))))). ( -25.60, z-score = -0.20, R) >droEre2.scaffold_4770 3569996 89 + 17746568 UCGCUCCAUG-CCACAGUGGUGGCCAGUGAUUAAGGGCACACUCCUGCCCACCGGACACCCAAAUU---GUUUUCCCG-------UAGAACCCGUGUCCA (((((....(-((((....))))).)))))....(((((......)))))...((((((.......---(((((....-------.)))))..)))))). ( -28.80, z-score = -1.76, R) >consensus UCGCUCCCUG_CCACAGUGGUGGCCAGUGAUUAAGGGCACACUCCUGCCCACCGGACACCGAAAUUGUUGUUUUCCCGGU____AAAAAAGCCGUGUCCA ....((.(((.((((....)))).))).))....(((((......)))))...((((((.((((.......))))..((............)))))))). (-23.98 = -24.98 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:11 2011