| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,440,768 – 7,440,875 |
| Length | 107 |
| Max. P | 0.546634 |
| Location | 7,440,768 – 7,440,875 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 92.55 |
| Shannon entropy | 0.11459 |
| G+C content | 0.38401 |
| Mean single sequence MFE | -22.02 |
| Consensus MFE | -19.56 |
| Energy contribution | -20.12 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.546634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7440768 107 - 27905053 --UAUACAUAUACUUAAAGAUUCUUUUGUCUCUGGAAACUUCUCGAGGAACUGACACACCCCAGACGAAUUUUUAUUCGCUGAUUUCUGCAGAUCUUCCGACAGUGAAU --.................((((..(((((...(....).....(((((.(((.((.....(((.(((((....)))))))).....))))).))))).))))).)))) ( -23.50, z-score = -2.13, R) >droSec1.super_0 6596335 109 + 21120651 UAUAUACAUAUAUUCAAAGAUUCUUUUGUCUCUGGAAACUUCUCGAGGAACUGACACACCCCAGACGAAUUUUUAUUCGCUGAUUUCUGCAGAUCUUGCGACAGUGAAU ............((((.((((......)))).)))).(((..(((((((.(((.((.....(((.(((((....)))))))).....))))).)))).))).))).... ( -22.40, z-score = -1.29, R) >droYak2.chr3R 11849933 103 + 28832112 ------UAUAUAUUCAAAGAUUCUUUUGUCUCUGGAAACUUCUCGGGGAACUGACACACCCCAGACGAAUUUUUAUUCGCUGAUUUCUGCAGAUCUUCUGACAGUGAAU ------.........((((((((....((((..(....).....((((..........))))))))))))))))((((((((.......(((.....))).)))))))) ( -23.20, z-score = -1.30, R) >droEre2.scaffold_4770 3566947 103 + 17746568 ------UAUAUAUUCAAAGAUUCUUUUGUCUCUGGAAACUUCUCGAGCAACUGACACACCCCAGACGAAUUUUUAUUCGCCGAUUUCUGCAGAUCUUCUGACAGUGAAU ------......((((.((((......)))).))))......(((.((..(((........)))..((((....)))))))))((.((((((.....))).))).)).. ( -19.00, z-score = -0.73, R) >consensus ______CAUAUAUUCAAAGAUUCUUUUGUCUCUGGAAACUUCUCGAGGAACUGACACACCCCAGACGAAUUUUUAUUCGCUGAUUUCUGCAGAUCUUCCGACAGUGAAU ...................((((..(((((...(....).....(((((.(((.((.....(((.(((((....)))))))).....))))).))))).))))).)))) (-19.56 = -20.12 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:08 2011