| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,437,312 – 7,437,405 |
| Length | 93 |
| Max. P | 0.597514 |
| Location | 7,437,312 – 7,437,405 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 81.76 |
| Shannon entropy | 0.34120 |
| G+C content | 0.53458 |
| Mean single sequence MFE | -21.63 |
| Consensus MFE | -14.04 |
| Energy contribution | -14.77 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.597514 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7437312 93 - 27905053 CUUGGCUGCACGUACCACUGAAUGUGAAAAGUGCUGACACAC-ACAC--GAGCUCCAUCCGCC----CGCCCAUCUCUCCAUGGGCUAUCAUCUCCCCCA ...(((.((((....(((.....)))....))))........-....--((......)).)))----.((((((......)))))).............. ( -21.40, z-score = -0.82, R) >droAna3.scaffold_13340 13880860 88 - 23697760 CUUCGUUGCACGUACCAC-GAAUGUGAAAAGUGCUGACAUUCAACAUCCACGCUUCAUUCAACUCUUCCCCCAACUCUCUAGUCGCUUU----------- ....(((((((....(((-....)))....)))).)))...................................................----------- ( -9.40, z-score = 0.30, R) >droEre2.scaffold_4770 3563543 91 + 17746568 CUCGGCUGCACGUACCACUGAAUGUGAAAAGUGCUGACACAC-ACGC----GCUCCAUUCAAC----CGCCCAUUUCUCCAUGGGCAAUCAUCUCCCCCA ...((..((.(((..(((.....)))....(((......)))-))).----)).)).......----.((((((......)))))).............. ( -22.00, z-score = -1.65, R) >droYak2.chr3R 11846425 91 + 28832112 CUUGGCUGCACGUACCACUGAAUGUGAAAAGUGCUGACACAC-ACGC----GCUCCAUUCAAC----CGCCCAUUUCUCCAUGGGUUAUCAUCUCCCCCA ..(((..((.(((..(((.....)))....(((......)))-))).----)).)))......----.((((((......)))))).............. ( -19.40, z-score = -0.72, R) >droSec1.super_0 6592965 95 + 21120651 CUUGGCUGCACGUACCACUGAAUGUGAAAAGUGCUGACACAC-ACUCACGUGCUCCAUCCGAC----CGCCCAUCUCUCGAUGGGCUAUCAUCUUUCCCA ..(((..((((((..(((.....)))....(((......)))-....)))))).)))...((.----.(((((((....)))))))..)).......... ( -30.40, z-score = -3.83, R) >droSim1.chr3R 13556700 95 + 27517382 CUUGGCUGCACGUACCACUGAAUGUGAAAAGUGCUGACACAC-ACACACGUGCUCCAUCCGAC----CGCCCAUCUCUCCAUGGGCUAUCAUCUCCCCCA ..(((..((((((..(((.....)))....(((.((.....)-)))))))))).)))...((.----.((((((......))))))..)).......... ( -27.20, z-score = -2.83, R) >consensus CUUGGCUGCACGUACCACUGAAUGUGAAAAGUGCUGACACAC_ACAC__G_GCUCCAUCCAAC____CGCCCAUCUCUCCAUGGGCUAUCAUCUCCCCCA .......((((....(((.....)))....))))..................................((((((......)))))).............. (-14.04 = -14.77 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:08 2011