Locus 9576

Sequence ID dm3.chr3R
Location 7,435,642 – 7,435,732
Length 90
Max. P 0.934730
window13142

overview

Window 2

Location 7,435,642 – 7,435,732
Length 90
Sequences 4
Columns 114
Reading direction forward
Mean pairwise identity 73.23
Shannon entropy 0.38926
G+C content 0.43845
Mean single sequence MFE -24.62
Consensus MFE -16.96
Energy contribution -17.53
Covariance contribution 0.56
Combinations/Pair 1.12
Mean z-score -1.84
Structure conservation index 0.69
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.39
SVM RNA-class probability 0.934730
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 7435642 90 + 27905053
------------------------GACCUCCACCGAUGGCCAAAAUGGGGAUUAUUUCGCAUUCCCAGUUUUAGGGUGUUUAUAACUCUGUAAGCUUGUGAAUUGAUGCCCCCC
------------------------(.((((....)).)).).....((((((((.((((((.....(((((((((((.......)))))).))))))))))).)))).)))).. ( -24.40, z-score =  -1.31, R)
>droSim1.chr3R 13555028 89 - 27517382
------------------------GACCUCCACCGAUGGCCAAAAUGGGUAUUAUUUCGCAUUCCCAGUUUUUGGGUGUUUAUAACUCUGUAAACUUGUGAAUUGAUGCCCCC-
------------------------(.((((....)).)).).....((((((((.((((((..(((((...))))).(((((((....))))))).)))))).))))))))..- ( -26.30, z-score =  -2.89, R)
>droSec1.super_0 6591275 89 - 21120651
------------------------GACCUCCACCGAUGGCCAAAAUGGGUAUUAUUUCGCAUUCCCAGUUUUUGGGUGUUUAUAACUCUGUAAACUUGUGAAUUGAUGCCCCC-
------------------------(.((((....)).)).).....((((((((.((((((..(((((...))))).(((((((....))))))).)))))).))))))))..- ( -26.30, z-score =  -2.89, R)
>droEre2.scaffold_4770 3561816 112 - 17746568
GACCAUCGCACACGGCCAAAAUGGGACUUACAAUUUCGAUUACAUACGAACUUAUUUCACAUUGCCAGUUAU-GCGUGUUUAUAACUCUGUAAACUUGGUAACUGAUGCCGCA-
............((((...((((.((..((....((((........))))..))..)).))))..(((((((-.((.(((((((....))))))).)))))))))..))))..- ( -21.50, z-score =  -0.29, R)
>consensus
________________________GACCUCCACCGAUGGCCAAAAUGGGUAUUAUUUCGCAUUCCCAGUUUUUGGGUGUUUAUAACUCUGUAAACUUGUGAAUUGAUGCCCCC_
..............................................((((((((.((((((.(((........))).(((((((....))))))).)))))).))))))))... (-16.96 = -17.53 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:07 2011