| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,422,943 – 7,423,037 |
| Length | 94 |
| Max. P | 0.750889 |
| Location | 7,422,943 – 7,423,037 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 72.67 |
| Shannon entropy | 0.48579 |
| G+C content | 0.53122 |
| Mean single sequence MFE | -34.70 |
| Consensus MFE | -15.15 |
| Energy contribution | -16.66 |
| Covariance contribution | 1.51 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.750889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7422943 94 + 27905053 CUGGGAGUGCGCAGGUGGCUCCCAGUUGGAGGAGUCCACGGAGCCUUGGCUUCUCCCGUCCUG--GAUGAUGACAAAAA-UUAAUGUACAUCGAAGA-------- ((((((((.((....))))))))))..(((((((.(((.(....).)))))))))).......--..((((((((....-....))).)))))....-------- ( -33.30, z-score = -1.24, R) >dp4.chr2 4794831 104 - 30794189 CUGCGAGUGCAGGAGUGCAGGUGGCUCUGAAGAGUGGCCUAUCCUGUGGCUUUGUCUGGUCUUUUGGUGAUGACAAAAA-UUAAUGUAUAUCGACGACAGAGCAC ........((((((....((((.((((....)))).)))).)))))).((((((((..(((.......(((((((....-....))).))))))))))))))).. ( -34.61, z-score = -1.89, R) >droPer1.super_6 4810679 104 - 6141320 CUGCGAGUGCAGGAGUGCAGGUGGCUCUGAAGAGUGGCCUAUCCUGUGGCUUUGUCUGGUCUUUUGGUGAUGACAAAAA-UUAAUGUAUAUCGACGACAGAGCAC ........((((((....((((.((((....)))).)))).)))))).((((((((..(((.......(((((((....-....))).))))))))))))))).. ( -34.61, z-score = -1.89, R) >droEre2.scaffold_4770 3549341 94 - 17746568 UUGGGAGUGCGCAGGUGGCUCCCAGUUGGAGGAGUCCACGGAGCCUUGGCUUCUCCCGUCCUG--GAUGAUGACAAAAA-UUAAUGUACAUCGAGGA-------- ..(((((.((.(((..((((((....((((....)))).)))))))))))..))))).((((.--((((...(((....-....))).)))).))))-------- ( -37.60, z-score = -2.25, R) >droYak2.chr3R 11831806 86 - 28832112 CUGGGAGUGCGCAGGUGGCUCCCAGUUGGAGGAG--------GCUUC--CUUCUCCCGUCCUG--GAUGAUGACAAAAAAUUAAUGUACAUCGAGGGC------- ((((((((.((....))))))))))..(((((((--------(...)--))))))).(((((.--((((...(((.........))).)))).)))))------- ( -36.70, z-score = -3.17, R) >droSec1.super_0 6578769 94 - 21120651 CUGGGAGUGCGCAGGUGGCUCCCAGUUGGAGGAGUCCACGGAGCCUUGGCUUCUCCCGUCCUG--GAUGAUGACAAAAA-UUAAUGUACAUAGCGGA-------- ((((((((.((....))))))))))..(((((((.(((.(....).))))))))))..(((..--.(((...(((....-....))).)))...)))-------- ( -31.80, z-score = -0.44, R) >droSim1.chr3R 13542866 85 - 27517382 CUGGGAGUGCGCAGGUGGCUCCCAGUUGGAGGAG---------CCUUGGCUUCUCCCGUCCUG--GAUGAUGACAAAAA-UUAAUGUACAUCGCGGA-------- ((((((((.((....))))))))))..(((((((---------(....))))))))....(((--((((...(((....-....))).)))).))).-------- ( -34.30, z-score = -2.37, R) >consensus CUGGGAGUGCGCAGGUGGCUCCCAGUUGGAGGAGUCCACGGAGCCUUGGCUUCUCCCGUCCUG__GAUGAUGACAAAAA_UUAAUGUACAUCGAGGA________ ((((((((((....))).)))))))..((((((((.............))))))))...........((((((((.........))).)))))............ (-15.15 = -16.66 + 1.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:02 2011