| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,420,658 – 7,420,754 |
| Length | 96 |
| Max. P | 0.907705 |
| Location | 7,420,658 – 7,420,754 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 84.19 |
| Shannon entropy | 0.23235 |
| G+C content | 0.51568 |
| Mean single sequence MFE | -30.85 |
| Consensus MFE | -26.79 |
| Energy contribution | -26.60 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.907705 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7420658 96 + 27905053 ACAUUUGCUUUUGGUCGCUCUCUUGGCCAUUUGCGAUU-----------------------GCUAGUUUACCACUGCGAGACGCCUUCCUCGGGGCGUCAAUCAAAUCAGCGGCCUUUC ............(((((((...((((..........((-----------------------((.(((.....)))))))(((((((......)))))))..))))...))))))).... ( -29.90, z-score = -1.90, R) >droSim1.chr3R 13540592 96 - 27517382 ACAUUUGCUUUUGGUCGCUCUCUUGGCCAUUUGCGAUU-----------------------GCUAGUUUACCACUGCGAGACGCCUUCCUCGGGGCGUCAAUCAAAUCAGCGGCCUUUC ............(((((((...((((..........((-----------------------((.(((.....)))))))(((((((......)))))))..))))...))))))).... ( -29.90, z-score = -1.90, R) >droYak2.chr3R 11829510 119 - 28832112 ACAUUUGCUUUUGCUCGCUCUCUUGGCCAUUUGCUAUUGCCAUGGCUAUUGCUAUUGCUAGGCUAGUUUACCACUGCGAGACGCCUUCCUCGGGGCGUCAAUCAAAUCAGCGGGCUUUC ............(((((((....(((((((..((....)).)))))))......((((..((........))...))))(((((((......))))))).........))))))).... ( -37.90, z-score = -1.71, R) >droEre2.scaffold_4770 3547080 89 - 17746568 ACAUUUGCUUUUGGUCGCUCUCUUGGCCAUU------------------------------GCUAGUUUACCACUGCGAGACGCCUUCCUCAGGGCGUCAAUCAAAUCAGCGGGCUUUC ...((((((..((((((......))))))((------------------------------((.(((.....)))))))(((((((......))))))).........))))))..... ( -25.70, z-score = -1.45, R) >consensus ACAUUUGCUUUUGGUCGCUCUCUUGGCCAUUUGCGAUU_______________________GCUAGUUUACCACUGCGAGACGCCUUCCUCGGGGCGUCAAUCAAAUCAGCGGCCUUUC ............(((((((...((((...................................((.(((.....)))))..((((((((....))))))))..))))...))))))).... (-26.79 = -26.60 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:01 2011