| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,089,325 – 7,089,421 |
| Length | 96 |
| Max. P | 0.688212 |
| Location | 7,089,325 – 7,089,421 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 92.80 |
| Shannon entropy | 0.12603 |
| G+C content | 0.39921 |
| Mean single sequence MFE | -25.00 |
| Consensus MFE | -15.72 |
| Energy contribution | -16.96 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.76 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.688212 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7089325 96 - 23011544 UAAAUAAAAGA-UUUUCCUCCUCCGAUAAGGAAAAAAGUCGGACACAAUCAAAGCAUAUCUUGCGGCGUCCGGCGGAGGAAAAAAAAGGCAAUUACU ...........-((((((((((((.....))).....(((((((.(.......(((.....))).).)))))))))))))))).............. ( -30.90, z-score = -4.47, R) >droSim1.chr2L 6877124 96 - 22036055 UAAAUAAAAGACUUUUCCUCCUCCGAUAAGGAAAAAAGUCGGACAAAAUCAAAGCAUAUCUUGCGGCGUCCGGCGGAGG-AAAAAAAGACAAUUACU ............((((((((((((.....))).....(((((((.....(...(((.....))).).))))))))))))-))))............. ( -28.90, z-score = -4.07, R) >droSec1.super_3 2613523 95 - 7220098 UAAAUAAAAGA-UUUUCCUCCUCCGAUAAGGAAAAAAGUCGGACAAAAUCAAAGCAUAUCUUGCGGCGUCCGGCGGAGG-AAAAAAAGACAAUUACU ...........-((((((((((((.....))).....(((((((.....(...(((.....))).).))))))))))))-))))............. ( -29.10, z-score = -4.21, R) >droYak2.chr2L 16505613 95 + 22324452 UAAAUAAAAGA-UUUUCCUCCUCCGAUAAGCAGAAAAGUCGGACAAAAUCAAAGCAUAUCUUCAGGCGUCCGGCGGAGA-AAAAAAAGGCAAUUAUU ...........-((((((.((((((((..........))))))..........((..........))....)).)))))-)................ ( -15.50, z-score = -0.10, R) >droEre2.scaffold_4929 16004102 94 - 26641161 UAAGUACAAGA-UUUUCCGCCUCCGAUAAGCAAAAAAGUCGGUCAAAAUCAAAGCAUAUCUUGAGGCGUCCGGCGGAG--GAAAAAAGGCAAUUACU ...((......-(((((((((.(((((..........)))))......((((........)))).......)))))))--))......))....... ( -20.60, z-score = -0.95, R) >consensus UAAAUAAAAGA_UUUUCCUCCUCCGAUAAGGAAAAAAGUCGGACAAAAUCAAAGCAUAUCUUGCGGCGUCCGGCGGAGG_AAAAAAAGGCAAUUACU ............(((.((((((((.....))).....(((((((.....(((........)))....)))))))))))).))).............. (-15.72 = -16.96 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:52 2011