| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,390,944 – 7,391,061 |
| Length | 117 |
| Max. P | 0.525499 |
| Location | 7,390,944 – 7,391,061 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.40 |
| Shannon entropy | 0.23425 |
| G+C content | 0.29612 |
| Mean single sequence MFE | -23.67 |
| Consensus MFE | -16.78 |
| Energy contribution | -18.10 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525499 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7390944 117 + 27905053 UACCAUCGAAAGAUAAGCAAAGCAAUUCCAUCAUUAAAUGAUAACUU--AACGAUUGUGAACAAUCAAUCGUGUUUAAGUACUAAA-AUUUGUCACUUAAUUUUAUGGGACUUGUAAUUA ....(((....))).......((((((((((.(((((.(((((((((--((((((((........)))))))...)))))......-...))))).)))))...)))))).))))..... ( -25.00, z-score = -2.96, R) >droEre2.scaffold_4770 3517022 119 - 17746568 UGCCAUCGAAAGACAGGAAAAACAAUUCAAUCAUUAAAAGAUAACUUCUAAUAAUUGUUAACAAUCAAUCGUGUUUAAGUACUGGC-AUCGGUCAUAUAAUUUUAUAGAACUUGUAAUUA (((((.....(((((.((.........((((.((((.(((....))).)))).))))...........)).)))))......))))-)..(((..((((....))))..)))........ ( -15.85, z-score = -0.18, R) >droYak2.chr3R 11799156 119 - 28832112 UGUCAUCGAAAGAUAAGAAAAGCAAUUCAAUCUUUAAAAGAUAACUUCUAAUGGUUGUUAGGAAUCAAUCGUGCUUAAGUACUCGC-AAUUGUCAUUUAAUUUUAUUGGACUUGUAAGUA ....(((....))).......((((((((((..(((((.(((((.(((((((....))))))).......((((....))))....-..))))).)))))....)))))).))))..... ( -21.70, z-score = -0.94, R) >droSec1.super_0 6546501 118 - 21120651 UGCCAUCGAAAGAUAAGCAAAGCAAUUCCAUCAUUAUAUGAUAACUU--AAUGAUUGUGAACAAUCAAUCGUGUUUAAGUACUGAACGUUUGUCACUUAAUUUUAUGGGACUGGUAAUUA (((((((....)))...........((((((.((((..((((((...--..((((((....)))))).....(((((.....)))))..))))))..))))...))))))..)))).... ( -27.60, z-score = -2.25, R) >droSim1.chr3R 13512268 118 - 27517382 UGCCAUCGAAAGAUAAGCAAAGCAAUUCCAUCAUUAAAUGAUAACUU--AAUGAUUGUGAACAAUCAAUCGUGUUUAAGUACUGAACGUUUGUCACUUAAUUUUAUGGGACUGGUAAUUA (((((((....)))...........((((((.(((((.((((((...--..((((((....)))))).....(((((.....)))))..)))))).)))))...))))))..)))).... ( -28.20, z-score = -2.56, R) >consensus UGCCAUCGAAAGAUAAGCAAAGCAAUUCCAUCAUUAAAUGAUAACUU__AAUGAUUGUGAACAAUCAAUCGUGUUUAAGUACUGAA_AUUUGUCACUUAAUUUUAUGGGACUUGUAAUUA ....(((....))).......((((((((((.(((((.(((((((((...(((((((........)))))))....))))..........))))).)))))...)))))).))))..... (-16.78 = -18.10 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:55 2011