| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,383,457 – 7,383,545 |
| Length | 88 |
| Max. P | 0.989464 |
| Location | 7,383,457 – 7,383,545 |
|---|---|
| Length | 88 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 73.34 |
| Shannon entropy | 0.50462 |
| G+C content | 0.49108 |
| Mean single sequence MFE | -22.02 |
| Consensus MFE | -12.03 |
| Energy contribution | -11.70 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.37 |
| SVM RNA-class probability | 0.989464 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7383457 88 + 27905053 -CCCGCAGCGUUGCCAGAUGCUGCGCC-AAGAACAAAGUGGCCACUCUGCCCUCUAUUUACUAACAAAAUUACUUGUUCUUGGCC-GCACU -...((((((((....))))))))(((-((((((((((.(((......)))))....................))))))))))).-..... ( -30.75, z-score = -4.27, R) >droSim1.chr3R 13504776 89 - 27517382 -CCCUCAGCGUUGCCAGACGCUGCGCC-AAGAACGUAGUGGCCACUCUGCCCUCUAUUUACUAACAAAAUUACCUAUUCUUGUCCCGCACU -.....((((((....))))))(((.(-(((((.((((((((......))).................)))))...))))))...)))... ( -18.52, z-score = -1.66, R) >droSec1.super_0 6539013 89 - 21120651 -CCCGCAGCGUUGCCAGACGCUGCGCC-AAGAACGUAGUGGCCACUCUGCCCUCUAUUUACUAACAAAAUUACCUAUUCUUGUCCCGCACU -..(((((((((....))))))))).(-(((((.((((((((......))).................)))))...))))))......... ( -22.72, z-score = -2.64, R) >droYak2.chr3R 11789402 90 - 28832112 CAAACCAGCGUUGCCAGACGCUGCUCCUAAGAACCCAGUGGCCACUCUGCCCUCUAUUUACUAACAAAAUUACCUGUUCUUGGCC-GCACU .....(((((((....)))))))..............(((((((....((.....((((.......)))).....))...)))))-))... ( -21.40, z-score = -2.16, R) >droEre2.scaffold_4770 3509684 88 - 17746568 -CCAGCAGCGUUGCCAGACGCUGCGCC-GACAAACUAGUGGCCACUCUGCCUUCUAUUUACUAACAAAAUUACCUGUUCUUGGCC-GCACU -...((((((((....))))))))...-.........(((((((....((.....((((.......)))).....))...)))))-))... ( -26.00, z-score = -2.51, R) >droVir3.scaffold_12855 9882043 87 + 10161210 --CUGCCAGAUUAUCGAAUACUGCCAU-AACACAAAUACCACAAAUUUGUAAUUAAAGAAACAAGACAACCAAUUGCGUGUGUUU-GUGCU --.((.((((((....))).))).)).-..((((((((((.(((..((((...............))))....))).).))))))-))).. ( -12.76, z-score = -0.36, R) >consensus _CCCGCAGCGUUGCCAGACGCUGCGCC_AAGAACAUAGUGGCCACUCUGCCCUCUAUUUACUAACAAAAUUACCUGUUCUUGGCC_GCACU ....((((((((....))))))))............((.(((......)))..)).................................... (-12.03 = -11.70 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:54 2011