| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,379,161 – 7,379,259 |
| Length | 98 |
| Max. P | 0.875011 |
| Location | 7,379,161 – 7,379,259 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 80.21 |
| Shannon entropy | 0.35188 |
| G+C content | 0.36387 |
| Mean single sequence MFE | -23.76 |
| Consensus MFE | -14.90 |
| Energy contribution | -16.42 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.875011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7379161 98 + 27905053 AUAGAACCGCAAGUAUGAGCAU-CUAUAGAUUCGAU-------UC-AAUGUUUUCGACUUUCAAUUAAGAAAGUUGAAGUGACGAAAGUUGCGAUUGCUAUUCGGUU ....(((((.((.....(((((-(............-------..-......((((((((((......))))))))))(..((....))..))).)))).))))))) ( -27.90, z-score = -2.95, R) >droSim1.chr3R 13500497 106 - 27517382 AUAGAACCACAAGUAUGAGCAUUCUAUAGAUUCGAUAGCCACUUC-AACGUUUUCGACUUUCAAUUAGGAAAGUUAAAGCGACGAAAGUUGCGAUUGCUAUUUGGUU ....(((((...((.((((....((((.......))))....)))-)))((..(((((((((......)))))))...(((((....)))))))..))....))))) ( -25.60, z-score = -2.08, R) >droSec1.super_0 6534751 106 - 21120651 AUAGAACCACAAGUAUAAGCAUUCUAUAGAUUCGAUAGCCACUUC-AACGUUUUCGACUUUCAAUUAGGAAAGUUAAAGCGACGAAACUUGCGAUUGCUAUUUGGUU ....(((((..((((...(((..((((.......))))....(((-..((((((.(((((((......)))))))))))))..)))...)))...))))...))))) ( -23.70, z-score = -2.02, R) >droYak2.chr3R 11419204 105 + 28832112 AUACACCCACAAGUAUAAGCAU-CUAAAGAUUCGUUAGCCACAUC-AACUGUUUCGACAUUGAAUUGAGCAAGUUGAAGCGACAAAAGUUGCGAUUGCUAUUUGGUU .........(((((...(((((-(...................((-((((..(((((.......)))))..)))))).(((((....))))))).)))))))))... ( -20.70, z-score = -0.48, R) >droEre2.scaffold_4770 3504977 93 - 17746568 -------------UAUAAGCAU-AUAAAGAUUCGAUAUGCACUUCCAACUGUUUCGACUUUGAAUUAAGAAAGUUGAAGCGACGAAAGACACGACUGCUAUUUGCUU -------------...(((((.-(((.((..(((...............((((((((((((........)))))))))))).(....)...)))))..))).))))) ( -20.90, z-score = -2.57, R) >consensus AUAGAACCACAAGUAUAAGCAU_CUAUAGAUUCGAUAGCCACUUC_AACGUUUUCGACUUUCAAUUAAGAAAGUUGAAGCGACGAAAGUUGCGAUUGCUAUUUGGUU .................((((...............................((((((((((......))))))))))(((((....)))))...))))........ (-14.90 = -16.42 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:53 2011