| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,358,031 – 7,358,130 |
| Length | 99 |
| Max. P | 0.974074 |
| Location | 7,358,031 – 7,358,130 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 82.29 |
| Shannon entropy | 0.33314 |
| G+C content | 0.53105 |
| Mean single sequence MFE | -36.43 |
| Consensus MFE | -29.05 |
| Energy contribution | -29.63 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.974074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7358031 99 + 27905053 UUUGGCGUGUUAAUGCCUUUUGGCUAUCAAUUGGCCAUUAUGUGCCCGGGGUUUGGGGG-CCAAAAGUCCCGGCUUCCGAGACCCUGCUCUUCGUCUUCU ...(((((....)))))...((((((.....)))))).........(((((((((((((-((.........))))))).))))))))............. ( -36.60, z-score = -1.75, R) >droSim1.chr3R 13481709 100 - 27517382 UUUGGCGUGUUAAUGCCUUUUGGCUAUCAAUUGGCCAUUAUGUGCCCAGGGUUUGGGGGGCCAAAAGUCCCGGCUUCCGAGACCCUGCUCUUCCUCUUCU ...(((((....)))))...((((((.....)))))).........((((((((.(((((((.........))))))).))))))))............. ( -40.00, z-score = -2.57, R) >droSec1.super_0 6514061 99 - 21120651 UUUGGCGUGUUAAUGCCUUUUGGCUAUCAAUUGGCCAUUAUGUGCCCGGGGUUUGGGGG-CCAAAAGUCCCGGCUUCCGAGACCCUGCUCUUCGUCUUCU ...(((((....)))))...((((((.....)))))).........(((((((((((((-((.........))))))).))))))))............. ( -36.60, z-score = -1.75, R) >droYak2.chr3R 11393681 87 + 28832112 UUUGGCGUGUUAAUGCCUUUUGGCUAUCAAUUGGCCAUUAUGUGCCGGGGGUUUGGGGG-CCAAAAGUCCCGGCUUCCGAGACCCUCU------------ ...((((..(.((((((..(((.....)))..)).)))))..))))(((((((((((((-((.........))))))).)))))))).------------ ( -38.20, z-score = -2.53, R) >droEre2.scaffold_4770 3484109 87 - 17746568 UUUGGCGUGUUAAUGCCUUUUGGCUAUCAAUUGGCCAUUAUGUGCCGGGGGUUUGGGGG-CCAAAAGUCCCGGCUUCCGAGACCCUCU------------ ...((((..(.((((((..(((.....)))..)).)))))..))))(((((((((((((-((.........))))))).)))))))).------------ ( -38.20, z-score = -2.53, R) >droWil1.scaffold_181089 8244184 97 - 12369635 UUUGGCGUGUUAAUGCCUUUUGGCUAUCAAUUGGCCAUUAUGUGCUGGGGGUCUUGGAC-CCACCAACAUCACCAUCAACAACACCACUGCCACACCG-- ..(((((((((.........((((((.....))))))....(((.((((((((...)))-)).))).)))..........)))))....)))).....-- ( -29.00, z-score = -1.36, R) >consensus UUUGGCGUGUUAAUGCCUUUUGGCUAUCAAUUGGCCAUUAUGUGCCCGGGGUUUGGGGG_CCAAAAGUCCCGGCUUCCGAGACCCUGCUCUUC_UCUU__ ...(((((....)))))...((((((.....)))))).........((((((((.((((.((.........)).)))).))))))))............. (-29.05 = -29.63 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:46 2011