| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,342,350 – 7,342,448 |
| Length | 98 |
| Max. P | 0.939483 |
| Location | 7,342,350 – 7,342,448 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 57.52 |
| Shannon entropy | 0.64915 |
| G+C content | 0.36903 |
| Mean single sequence MFE | -18.46 |
| Consensus MFE | -5.95 |
| Energy contribution | -7.45 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.939483 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7342350 98 + 27905053 ---CUUUCUGUUUAAGCAUCCUAUUAAGUAGUUCACGAAACAGAACGUUUCACGGCACGUGAACGUGCCACGUCAGUGGCAACACGGCACUAUUUGCAUAA ---..................(((((((((((....(((((.....)))))..((((((....))))))..(((.(((....)))))))))))))).))). ( -30.40, z-score = -3.07, R) >droSec1.super_0 6498560 76 - 21120651 ---CUUUCUGUUUAAGCAUCCAAUUAAGUAGUUCACGAAACAGAAAGUU----------------------GUCAAUGGCAACACGACACUAUUUGUAUAA ---((((((((((.(((.............)))....)))))))))).(----------------------(((..((....)).))))............ ( -14.52, z-score = -1.49, R) >droSim1.chr3R 13466121 76 - 27517382 ---CUUUCUGUUUAAGCAUCCAAUUAAGUAGUUCACGAAACAGAAAGUU----------------------GUCAAUGGCAACACGACACUAUUUGCAUAA ---((((((((((.(((.............)))....)))))))))).(----------------------(((..((....)).))))............ ( -14.52, z-score = -1.47, R) >droWil1.scaffold_181089 8231832 94 - 12369635 GGAUAUUACAAAAAAGUGUAAAAUGCAAUAAAAAUUUACAUGGAACAAU-----GUGAAUAGAAGGGCCAAGGAAAUGAGAGCAUGGAA--AAUGGAACAG (.((.(((((......))))).)).).......((((((((......))-----))))))....(..(((.....(((....)))....--..)))..).. ( -14.40, z-score = -2.92, R) >consensus ___CUUUCUGUUUAAGCAUCCAAUUAAGUAGUUCACGAAACAGAAAGUU______________________GUCAAUGGCAACACGACACUAUUUGCAUAA ...((((((((((.(((.............)))....))))))))))........................(((.(((....))))))............. ( -5.95 = -7.45 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:41 2011