Locus 9554

Sequence ID dm3.chr3R
Location 7,340,608 – 7,340,728
Length 120
Max. P 0.631637
window13109

overview

Window 9

Location 7,340,608 – 7,340,728
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.75
Shannon entropy 0.16497
G+C content 0.41226
Mean single sequence MFE -32.40
Consensus MFE -28.32
Energy contribution -27.64
Covariance contribution -0.68
Combinations/Pair 1.25
Mean z-score -1.43
Structure conservation index 0.87
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.29
SVM RNA-class probability 0.631637
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 7340608 120 + 27905053
UACCCGGUAGUCGUGGAAUGCAGGGGAGUAUGUGUGCAUGCCAAUGAAGAAUAUGGAAUAUAUAUUCCUGGAUAACAGCUGAAUAAAUUCCUGGAUUUCAAAGUCUGGACAAGCAAUAAA
...((((......((((((.(((((((((((((((.....(((((.....)).))).)))))))))))((.....))............)))).))))))....))))............ ( -30.30, z-score =  -0.99, R)
>droSim1.chr3R 13464391 120 - 27517382
UACCCGGUAGUCGUGGAGUGCAGGGGAGUAUGUGUGCAUGCCAAUGAAGAAUAUGGAAUAUAUAUUCCUGGAUAACAGCUAAAUAAAUUCCUGGAUUCCAAAGUCUGGACAAGCAAUAAA
...((((......((((((.(((((((((((((((.....(((((.....)).))).)))))))))))((.....))............)))).))))))....))))............ ( -33.20, z-score =  -1.70, R)
>droSec1.super_0 6496843 112 - 21120651
UACCCGGUAGUCGUGGAGUGCAGGGGAGUAUGUGUGCAUGCCAAUGAAGAAUAUGGAAUAUAUAUUCCUGGAUAACAGCUAAAUAAAUUCCUGGAUUCCAAAGACUGGACAA--------
...(((((.....((((((.(((((((((((((((.....(((((.....)).))).)))))))))))((.....))............)))).))))))...)))))....-------- ( -35.30, z-score =  -2.80, R)
>droYak2.chr3R 11376118 120 + 28832112
UACCUGGUAGUCGUGGAGUGCAGGGGAAUAUGUGUGCAUGCCAAUGAAGAAUAUGGAAUAUGUACUCCUGGAUAACAGCUGAAUAAAUUCCUGGAUUUCAAAGUCUGGACAGGCAACCAA
..((((((.(((..((((((((......(((((...(((....)))....))))).....))))))))..))).))..............(..((((....))))..).))))....... ( -30.70, z-score =  -0.21, R)
>droEre2.scaffold_4770 3466938 120 - 17746568
UACCUGGUAGUCGUGAAGUGCAGGGGUAUAUGUGUGCAUGCCAAUGAAGAAUAUGUACUAUGUAUUUCUGGAUAACAGCUGAAUAAAUUCCUGGAUUUCAAAGUCCGGACAAGCACUAAA
......((.(((..((((((((..(((((((((...(((....)))....))))))))).))))))))..))).)).((((((....)))(((((((....)))))))...)))...... ( -32.50, z-score =  -1.48, R)
>consensus
UACCCGGUAGUCGUGGAGUGCAGGGGAGUAUGUGUGCAUGCCAAUGAAGAAUAUGGAAUAUAUAUUCCUGGAUAACAGCUGAAUAAAUUCCUGGAUUUCAAAGUCUGGACAAGCAAUAAA
...((((......((((((.(((((((((((((((.....(((((.....)).))).)))))))))))((.....))............)))).))))))....))))............ (-28.32 = -27.64 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:40 2011