| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,337,346 – 7,337,445 |
| Length | 99 |
| Max. P | 0.507723 |
| Location | 7,337,346 – 7,337,445 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 79.54 |
| Shannon entropy | 0.38618 |
| G+C content | 0.33323 |
| Mean single sequence MFE | -22.41 |
| Consensus MFE | -14.46 |
| Energy contribution | -16.12 |
| Covariance contribution | 1.66 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.507723 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 7337346 99 - 27905053 AACAUUCGAUGGCGUACAUGGCGUAUACGCAAUGUA---UGCAUAUGCCUAAAAGCCAAACAUUUUGUUAUUAAAUAUAUAACACAUGAAUGUUGAAGCUUA ...........((((((((.(((....))).)))))---)))..........((((..(((((((((((((.......))))))...)))))))...)))). ( -27.40, z-score = -2.68, R) >droSim1.chr3R 13460343 102 + 27517382 AACAUUCAAUGGCGCACAUGGCGAAUACGCAAUGUAGUAUGCAUAUGCCUAAAAGCCAACCAUUUUGUUAUUAAAUAUAUAGCACAUGAAUGUUGAAGCUUA ((((((((.((((((((((.(((....))).)))).))..((....))......)))).......((((((.......))))))..))))))))........ ( -24.60, z-score = -1.05, R) >droSec1.super_0 6493603 102 + 21120651 AACAUUCAAUGGCGCACAUGGCGAAUACGCAAUGUAGUAUGCAUAUGCCUAAAAGCCAACCAUUUUGUUAUUAAAUAUACAACACAUGAAUGUUGAAGCUUA ((((((((.((((((((((.(((....))).)))).))..((....))......))))......((((..........))))....))))))))........ ( -21.60, z-score = -0.49, R) >droYak2.chr3R 11372805 99 - 28832112 AACAUUCGAUGGCACACAUGGCGUAUACGCAAUGUAG---GCAUAUGCUUAAAAGCCAAACAUUUUGUUAUUAAAUAUAUAACACAUGAAUGCUGAAGCUUA ..((((((.((((..((((.(((....))).))))((---((....))))....)))).......((((((.......))))))..)))))).......... ( -23.80, z-score = -1.69, R) >droEre2.scaffold_4770 3463717 99 + 17746568 CACAUUCAAUGGCGCACAUGGCGUAUACGCAAUAUA---UGCAUAUGCUUAAAAGCCAAACAUUUUGUUAUUAAAUAUAUAACACAUGAAUGUUGAAGCUUA .(((((((.((((......(((((((..(((.....---)))))))))).....)))).......((((((.......))))))..)))))))......... ( -24.40, z-score = -1.92, R) >droAna3.scaffold_13340 13776585 92 - 23697760 AAUAUU--ACGAUGUUUUAGGCGUAUGCGUGAUAUU---UGAUAAUGGCGGCAAAU--AACAUUUAUAAAAAAGAUUUAUAAAAAA-GAACG--GAACCAUG ((((((--(((((((.....))))...)))))))))---.....((((...(....--....((((((((.....))))))))...-.....--)..)))). ( -12.69, z-score = -0.01, R) >consensus AACAUUCAAUGGCGCACAUGGCGUAUACGCAAUGUA___UGCAUAUGCCUAAAAGCCAAACAUUUUGUUAUUAAAUAUAUAACACAUGAAUGUUGAAGCUUA ((((((((.((((......(((((((..(((........)))))))))).....)))).......((((((.......))))))..))))))))........ (-14.46 = -16.12 + 1.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:38 2011