| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,333,256 – 7,333,357 |
| Length | 101 |
| Max. P | 0.788412 |
| Location | 7,333,256 – 7,333,357 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 81.23 |
| Shannon entropy | 0.33609 |
| G+C content | 0.37316 |
| Mean single sequence MFE | -24.88 |
| Consensus MFE | -18.62 |
| Energy contribution | -18.74 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.788412 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7333256 101 - 27905053 ACAAGGUCCUGG-UUUUGAUUGAUUCAGUACUGUCGAGGUAUUUUUAUUGUAUAUGCCUUUACAAUGAUUGAUUCAGUAGUAAAGAGGUUAUUUUAAGGUGU .......(((..-((...(((((.(((((..(((.(((((((...........))))))).)))...))))).)))))...))..))).............. ( -21.80, z-score = -1.25, R) >droSim1.chr3R 13455501 94 + 27517382 ACAAGGUCCUGG-UUUUGAUUGAUUCAGUACUGUCGAGGUACAUAU-UUCUAUAUGCCUUCACAGUGAUUGAUUCAGUAGUAAAGAGGCAAUUUAA------ .....(.(((..-((...(((((.((((((((((.((((((.(((.-...))).)))))).))))).))))).)))))...))..)))).......------ ( -26.90, z-score = -2.81, R) >droSec1.super_0 6489524 100 + 21120651 ACAAGGUCCUGG-UUUUGAUUGAUUCAGUACUGUCGAGGUACACAU-UUCUAUAUGCCUUCAUAGUGAUUGAUUCAGUAGUAAGGAGGCAAUUUAAAGCUGC ......((((..-.....(((((.((((((((((.((((((.....-.......)))))).))))).))))).)))))....))))(((........))).. ( -24.80, z-score = -1.03, R) >droYak2.chr3R 11368574 97 - 28832112 ACAAGGUCCUGGUUCUUGAUUGAUUCAGUACUGCCGAGGUAC-----UUCUAUUGGCUAUCACAGUGAUUGAUUCGGUAGUAAAAAGGUAUUUUUGCGCUGA .(((((.......)))))......((((((((((((((....-----.((.((((.......))))))....)))))))))......(((....)))))))) ( -24.50, z-score = -0.76, R) >droEre2.scaffold_4770 3459642 96 + 17746568 ACAAUGUCCUGGAUCUUGAUUGAUUCAGUACUGUAGAGGUAU-----UUCUAUUGGCCUUCACAGUGAUUGAUUCAGUGGUAAAAAGGU-AUUUUGACCAGU .((((...(((((((......)))))))((((((..((((..-----........))))..))))))))))......((((.((((...-.)))).)))).. ( -26.40, z-score = -1.68, R) >consensus ACAAGGUCCUGG_UUUUGAUUGAUUCAGUACUGUCGAGGUAC___U_UUCUAUAUGCCUUCACAGUGAUUGAUUCAGUAGUAAAGAGGUAAUUUUAAGCUGU .......(((........(((((.((((((((((.(((((...............))))).))))).))))).))))).......))).............. (-18.62 = -18.74 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:34 2011