| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,332,848 – 7,332,938 |
| Length | 90 |
| Max. P | 0.589539 |
| Location | 7,332,848 – 7,332,938 |
|---|---|
| Length | 90 |
| Sequences | 9 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 69.13 |
| Shannon entropy | 0.61792 |
| G+C content | 0.57916 |
| Mean single sequence MFE | -34.08 |
| Consensus MFE | -8.15 |
| Energy contribution | -8.56 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7332848 90 - 27905053 --------CGGAUAUGGCUCCGAAACCAGCGACUGCGGGCAUGCCAGAGGCUGUGGCUCCUACUGGGCUGCAGCCCUGAGCAUGAUUUGUUACUGACA --------((((......))))....(((..((......((((((((.(((((..((.((....))))..)))))))).)))))....))..)))... ( -40.90, z-score = -3.33, R) >droAna3.scaffold_13340 13771985 77 - 23697760 --------------CGGCUAUGG---CAACGGCUACAGACUA--CGGAC--UACGGCUCCUACUGGGCUGUAGCCCUGAGCAUGAUUUGUUACUGACA --------------.((((..(.---...))))).(((....--.((.(--((((((.((....))))))))).))..((((.....)))).)))... ( -24.30, z-score = -1.72, R) >droEre2.scaffold_4770 3459222 95 + 17746568 CGGAUACUCGGAUACGGCUCCGAA---AACGACUACGGGCAUGCCAGAGGCGGUGGCUCCUACUGGGCUGCAGCCCUGAGCAUGAUUUGUUACUGACA (((....(((((......))))).---((((((....).((((((((.(((.(..((.((....))))..).)))))).)))))..))))).)))... ( -36.30, z-score = -2.45, R) >droYak2.chr3R 11368125 90 - 28832112 --------CGGAUACGGCUCCGAAAACGACUACGGGGAGAGAGCCAGAGGCUGUGGCUCCUACUGGGCUGCAGCCCUGAGCAUGAUUUGUUGCUGACA --------......((((..((((.....(....).......(((((.(((((..((.((....))))..)))))))).))....))))..))))... ( -34.90, z-score = -2.09, R) >droSec1.super_0 6489085 90 + 21120651 --------CGGAUAUGGCUCCGAAACCAACGACUACGGGCAUGCCAGAGGCUGUGGCUCCUACUGGGCUGCAGCCCUGAGCAUGAUUUGUUACUGACA --------((((......)))).....((((((....).((((((((.(((((..((.((....))))..)))))))).)))))..)))))....... ( -37.60, z-score = -3.58, R) >droSim1.chr3R 13455075 90 + 27517382 --------CGGAUAUGGCUCCGAAACCAGCGACUACGGGCAUGCCAGAGGCUGUGGCUCCUACUGGGCUGCAGCCCUGAGCAUGAUUUGUUACUGACA --------((((......))))....(((..((......((((((((.(((((..((.((....))))..)))))))).)))))....))..)))... ( -40.90, z-score = -3.88, R) >droVir3.scaffold_12855 9829393 77 - 10161210 --------------CGGCUACGACUAGGAUGGCG-GCGCCUGGGCUGUUGCCUGUUCUGG------GCCGUAGCCCUGAGCAUGAUUUGUUACUGACA --------------.(((((((.(((((((((((-((((....)).)))))).)))))))------..)))))))...((((.....))))....... ( -33.90, z-score = -2.73, R) >droMoj3.scaffold_6540 24830852 84 - 34148556 --------CGGCAACGGCAACGG---CAACGGCU-CCGACUA--CAGGCCAUAGAGCUCGUUGUGGGCCGCAGCCCUGAGCAUGAUUUGUUACUGACA --------.(((..((((..(.(---((((((((-(......--.........)))).)))))).)))))..)))...((((.....))))....... ( -26.86, z-score = 0.03, R) >droGri2.scaffold_14830 2171937 82 - 6267026 -------------CAGGCUGCUCAGGCUUCGGCU-CCAACAGAGCUG-CGCCUGGACUGGCUGU-AGCUGUAGCCCUGAGCAUGAUUUGUUACUGACA -------------((((((((((((((..(((((-(.....))))))-.))))))...(((...-.))))))).))))((((.....))))....... ( -31.10, z-score = -0.58, R) >consensus ________CGGAUACGGCUCCGAAA_CAACGACUACGGGCAUGCCAGAGGCUGUGGCUCCUACUGGGCUGCAGCCCUGAGCAUGAUUUGUUACUGACA ..............((....)).................................((((.....((((....)))).))))................. ( -8.15 = -8.56 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:33 2011