| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,329,815 – 7,329,910 |
| Length | 95 |
| Max. P | 0.977872 |
| Location | 7,329,815 – 7,329,910 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 86.57 |
| Shannon entropy | 0.25428 |
| G+C content | 0.46537 |
| Mean single sequence MFE | -24.97 |
| Consensus MFE | -20.42 |
| Energy contribution | -21.32 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.977872 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7329815 95 - 27905053 -CCCCAUCCUA---GUUUGUCGUGUGAUGUACUGGGGUGUUUGAUAAACUAAUUUGUCAAAGUAAUCCCAGCCCUUCGCGCCCUUGCGCUGCUGUCUAA -...(((((((---((.((((....)))).)))))))))(((((((((....))))))))).......((((.....((((....)))).))))..... ( -28.30, z-score = -3.94, R) >droSim1.chr3R 13452075 95 + 27517382 -CCCCAUCCUA---GUUUGUCGUGUGAUGUACUGGGGUGUUUGAUAAACUAAUUUGUCAAAGUAAUCCCAGCUCUUCGCGCCCUUGGGCUGCUGUCUAA -..........---.......((((((.(..(((((((.(((((((((....)))))))))...)))))))..).))))))...(((((....))))). ( -29.70, z-score = -3.57, R) >droSec1.super_0 6486120 96 + 21120651 CCCCCAUCCUA---GUUUGUCGUGUGAUGUACUGGGGUGUUUGAUAAACUAAUUUGUCAAAGUAAUCCCAGCUCUUCGCGCCCUUGGGCUGCUGUCUAA ...........---.......((((((.(..(((((((.(((((((((....)))))))))...)))))))..).))))))...(((((....))))). ( -29.70, z-score = -3.50, R) >droYak2.chr3R 11365036 97 - 28832112 --CCCAUCCUACCCAUUUGUCGUGUGAUGUACUGGGCUGUUUGAUAAACUAAUUUGUCAAAGUAAUCCCAGCUAUUUGCGCCCUUGGGCUGCUGUCUAA --.........((((...(..(((..(.((((((((...(((((((((....))))))))).....))))).))))..))).).))))........... ( -23.20, z-score = -1.39, R) >droEre2.scaffold_4770 3456234 89 + 17746568 --CCCAUCCUA---GUUUGUCGCUUGA-----UGGGGUGUUUGAUAAACUAAUUUGUCAAAGUAAUCCCAGCUCUUUGCGCCCUUGGGCUGCUGUCUAA --.......((---(...((.(((..(-----((((((.(((((((((....)))))))))...))))))((.....))....)..))).))...))). ( -24.50, z-score = -1.98, R) >droAna3.scaffold_13340 13768818 93 - 23697760 -CCCCAAACUA-----UUGCUGUGUGAUGUUCCAUGGUGUUUGAUAAACUAAUUUGCCAGAGUAAUCCCCGCUCUUUACACCCUCAAGCGGCUAUCUAA -..........-----..(((((.(((.......(((((..(.........)..)))))((((.......)))).........))).)))))....... ( -14.40, z-score = 0.11, R) >consensus _CCCCAUCCUA___GUUUGUCGUGUGAUGUACUGGGGUGUUUGAUAAACUAAUUUGUCAAAGUAAUCCCAGCUCUUCGCGCCCUUGGGCUGCUGUCUAA .....................((((((....(((((((.(((((((((....)))))))))...)))))))....))))))..((((((....)))))) (-20.42 = -21.32 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:32 2011