| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,326,326 – 7,326,435 |
| Length | 109 |
| Max. P | 0.879538 |
| Location | 7,326,326 – 7,326,435 |
|---|---|
| Length | 109 |
| Sequences | 7 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 65.51 |
| Shannon entropy | 0.67436 |
| G+C content | 0.51441 |
| Mean single sequence MFE | -13.30 |
| Consensus MFE | -7.62 |
| Energy contribution | -7.50 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.67 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.879538 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7326326 109 + 27905053 GCUUAGUGUGUAAUGAAGAAAUUACCAAAAGCUCGAAUCCAACCACCAG-CCCCCCUCCACUUCCAGGAUCCUUCUAACGACCCAACGGAAGGCA----CCCCCCAUCCCCCUG ((((..((.(((((......))))))).))))................(-((..(((((.......)))....((....))......))..))).----............... ( -17.30, z-score = -1.11, R) >dp4.chr2 25622196 83 + 30794189 GCUUAGUGUGUAAUGAAGAAAUUACCAAAAGCUUUCCCUUUACUCC-----ACCUGCAC--CCCCAUGGAGCAUGCCACAUGCCACAGGC------------------------ ((((..((.(((((......))))))).))))..............-----.((((..(--(.....)).(((((...)))))..)))).------------------------ ( -16.40, z-score = -0.48, R) >droAna3.scaffold_13340 13764661 88 + 23697760 GCUUAGUGUGUAAUGAAGAAAUUACCAAAAGCUAGGCAUCUCCCCCC----ACCCACAGUGCCCCACAG-GCUCACUACUCCCCCACUGCUCC--------------------- (((((((..(((((......))))).....)))))))..........----.....(((((......((-.....)).......)))))....--------------------- ( -16.22, z-score = -0.92, R) >droEre2.scaffold_4770 3452726 99 - 17746568 GCUUAGUGUGUAAUGAAGAAAUUACCAAAAGCUCGAAUCCGACCACC----------CCACUUCCAGGAUCCUUCUAACGACCCAACAG-CCCC----CAUUCCCCACCCCCUG ((((..((.(((((......))))))).))))(((....))).....----------.......((((.....((....)).......(-....----)...........)))) ( -10.40, z-score = -0.75, R) >droYak2.chr3R 11361407 100 + 28832112 GCUUAGUGUGUAAUGAAGAAAUUACCGAAAGCUCGAAUCCGACCACC----------CCACUUCCAGGAUCCUUCUAACGACCCAACAGUCCCC----CCCUCCCCCCUCACUA ...(((((.(....((((.......(((....))).((((.......----------.........)))).))))....(((......)))...----.........).))))) ( -11.69, z-score = -0.50, R) >droSec1.super_0 6482707 114 - 21120651 GCUUAGUGUGUAAUGAAGAAAUUACCAAAAGCUCGAAUACAACCACCAGACCCCAACCCACUUCCAGGAUCCUUCUAACGACCCAACAGAAACCAUAACCUCCCCUCUCCCCUG ((((..((.(((((......))))))).))))................................((((.....((....))......(((...............)))..)))) ( -10.56, z-score = -0.40, R) >droSim1.chr3R 13448633 114 - 27517382 GCUUAGUGUGUAAUGAAGAAAUUACCAAAAGCUCGAAUCCAACCACCAGACCCCAAACCACUUCCAGGAAUCUUCUAACGACCCAACAGAAACCAUAACCCCCCCUCUCCCCUG ((((..((.(((((......))))))).))))................................((((.....((....))......(((...............)))..)))) ( -10.56, z-score = -0.54, R) >consensus GCUUAGUGUGUAAUGAAGAAAUUACCAAAAGCUCGAAUCCAACCACC____CCC_ACCCACUUCCAGGAUCCUUCUAACGACCCAACAGAACCC____CCCCCCC_CCCCCCUG ((((..((.(((((......))))))).)))).................................................................................. ( -7.62 = -7.50 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:31 2011