| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,323,771 – 7,323,869 |
| Length | 98 |
| Max. P | 0.994182 |
| Location | 7,323,771 – 7,323,869 |
|---|---|
| Length | 98 |
| Sequences | 8 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 72.15 |
| Shannon entropy | 0.54993 |
| G+C content | 0.50039 |
| Mean single sequence MFE | -18.62 |
| Consensus MFE | -16.92 |
| Energy contribution | -16.45 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.68 |
| SVM RNA-class probability | 0.994182 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7323771 98 + 27905053 -GAGGGCGAUAUGUCGCGUCGCUGUUUACACAAACAAAGUUAUCAAUUUUACACACGACAGUCGCCCCCCAUCCACCAUCCCGCACCACACAUCCACAU------- -..(((((((.(((((.((...(((((....)))))..((..........)))).))))))))))))................................------- ( -20.60, z-score = -2.95, R) >droSim1.chr3R 13446080 92 - 27517382 -GAGGGCGAUAUGUCGCGUCGCUGUUUACACAAACAAAGUUAUCAAUUUUACACACGACAGUCGCCCCCCAUUCACCAUCCCGCAUCCGACAU------------- -..(((((((.(((((.((...(((((....)))))..((..........)))).))))))))))))..........................------------- ( -20.60, z-score = -2.37, R) >droSec1.super_0 6480155 92 - 21120651 -GAGGGCGAUAUGUCGCGUCGCUGUUUACACAAACAAAGUUAUCAAUUUUACACACGACAGUCGCCCCCCAUCAACCAUCCCGCAUCCCACAU------------- -..(((((((.(((((.((...(((((....)))))..((..........)))).))))))))))))..........................------------- ( -20.60, z-score = -3.01, R) >droYak2.chr3R 11358786 98 + 28832112 -GAGGGCGAUAUGUCGCGUCGCUGUUUACACAAACAAAGUUAUCAAUUUUACACACGACAGUCGUUCCUCCCUCAUCCCGCAGCCAUCCGCAUACCCAU------- -(((((((((.(((((.((...(((((....)))))..((..........)))).))))))))).))))).........((........))........------- ( -19.70, z-score = -1.67, R) >droEre2.scaffold_4770 3450194 105 - 17746568 -GAGGGCGAUAUGUCGCGUCGCUGUUUACACAAACAAAGUUAUCAAUUUUACACACGACAGUCGCCCACCCCCCGCACCCGCACCCGCACCCACACCCAUCCGCAC -..(((((((.(((((.((...(((((....)))))..((..........)))).)))))))))))).......((....))....((..............)).. ( -22.84, z-score = -2.27, R) >droAna3.scaffold_13340 13761563 74 + 23697760 -GAGGGCGAUAUGUCGCGUCGCUGUUUACACAAACAAAGUUAUCAAUUUUACACACGACAGUCGCCUCCUCCUGC------------------------------- -(..((((((.(((((.((...(((((....)))))..((..........)))).)))))))))))..)......------------------------------- ( -19.10, z-score = -2.06, R) >droPer1.super_4671 771 75 - 2078 -GAUGGCGAUAUGUCGCGUCGCUGUUUACACAAACAAAGUUAUCAAUUUUACACACGACAGUCGGAGAACCCCCCU------------------------------ -(((.((((....))))((((.(((((....)))))..((..........))...)))).)))((........)).------------------------------ ( -11.90, z-score = 0.46, R) >droWil1.scaffold_181089 8214390 85 - 12369635 AGGAGGACAAAUGUCGCGCCGCUGUUUACACAAACAAAGUUAUCAAUUUUACACACGAUGUUCCCCUCCCCGCUAUUCCCAUUUG--------------------- .(((((...(((((((.(....(((((....)))))..((..........)).).)))))))..)))))................--------------------- ( -13.60, z-score = -0.61, R) >consensus _GAGGGCGAUAUGUCGCGUCGCUGUUUACACAAACAAAGUUAUCAAUUUUACACACGACAGUCGCCCCCCCCCCACCACCCCGCA__C__CAU_____________ ...(((((((.(((((.((...(((((....)))))..((..........)))).))))))))))))....................................... (-16.92 = -16.45 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:30 2011