| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,289,274 – 7,289,368 |
| Length | 94 |
| Max. P | 0.772213 |
| Location | 7,289,274 – 7,289,368 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 64.69 |
| Shannon entropy | 0.63668 |
| G+C content | 0.49705 |
| Mean single sequence MFE | -29.36 |
| Consensus MFE | -13.30 |
| Energy contribution | -13.56 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.772213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7289274 94 + 27905053 ------GGAGCAGCAGGCCUUUGACCAACCAAAGAAUGGU-----AUUUCUUU-GGCGCUGUUUGCCGGAAUAUCUGAUAUCCCCAAUGGUCCGAGUAGGCAGCGC-------- ------((.((.....)))).........(((((((....-----..))))))-)(((((((((((((((.(((.((.......))))).)))).)))))))))))-------- ( -30.30, z-score = -1.08, R) >droAna3.scaffold_13340 13723018 87 + 23697760 -------GAACGGCUGGCCUUUGACCGAGAAUGGAAUGGU-----AUUCGUUUCGGGGCAGUUUGUCUGAAUUUCCAA-------AACGGUCAGAGUAGGCAGCAC-------- -------.....((((.((((((((((.....((((((..-----...))))))(((.(((.....)))....)))..-------..)))))))))..).))))..-------- ( -29.80, z-score = -2.20, R) >droEre2.scaffold_4770 3415323 92 - 17746568 ------GGGGUAGCAGGCCUUUGACUGACCGAAGAAUGGU-----AUUUCUUU-GGCGCUGUUUGCCCGAAUAUCUGUUAUCC--GAUGGACGUAGUAGGCAGCUC-------- ------(((((.....))))).....(.((((((((....-----..))))))-)))(((((((((.((..((((........--))))..))..)))))))))..-------- ( -27.80, z-score = -0.59, R) >droYak2.chr3R 11323822 92 + 28832112 ------GGGGUGGCAGGCCUUUGACCGAACGAAGAAUGGU-----AUUUCUCU-GGCGCUGUUUGCCCGAAUAUCUGAUAUCC--AAUGGUCGGAGUAGGCAGCUU-------- ------(..(((.((...(((((......)))))..)).)-----))..)...-...(((((((((((((.(((.((.....)--)))).)))).)))))))))..-------- ( -29.00, z-score = -0.40, R) >droSec1.super_0 6446056 94 - 21120651 ------GUGCCAGCAGGCCUUUGACUGACCGAAGAAUGGU-----AUUUCUUU-GGCGCUGUUUGCCGGAAUAUCUGAUAUCCCCAAUGGUCCGAGUAGGCAGCGA-------- ------..(((....)))..........((((((((....-----..))))))-))((((((((((((((.(((.((.......))))).)))).)))))))))).-------- ( -33.50, z-score = -2.16, R) >droSim1.chr3R_random 455194 94 + 1307089 ------GUGCCAGCAGGCCUUUGACUGACCGAAGAAUGGU-----AUUUCUUU-GGCGCUGUUUGCCGGAAUAUCUGAUAUCCCCAAUGGUCCGAGUAGGCAGCGA-------- ------..(((....)))..........((((((((....-----..))))))-))((((((((((((((.(((.((.......))))).)))).)))))))))).-------- ( -33.50, z-score = -2.16, R) >droWil1.scaffold_181089 8176535 114 - 12369635 ACAACGACCGUGUUUACACUCUAACUCGGUGAAGGAGAAUCUAUAAUUCAUCUUUACAAUUUUAUCUGGAGAAUCUCGAUCGUUUUGUAGUUCAUUUCUGUUCUGAGUAGGCUG .....(.(((((....)))....((((((...(((((((.((((((..((((....((........))(((...)))))).)..)))))))))..))))...)))))).))).. ( -21.60, z-score = 0.46, R) >consensus ______GGGGCAGCAGGCCUUUGACUGACCGAAGAAUGGU_____AUUUCUUU_GGCGCUGUUUGCCGGAAUAUCUGAUAUCC__AAUGGUCCGAGUAGGCAGCGA________ ..................(((((......))))).......................(((((((((((((.(((............))).)))).))))))))).......... (-13.30 = -13.56 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:27 2011