| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,275,343 – 7,275,435 |
| Length | 92 |
| Max. P | 0.599742 |
| Location | 7,275,343 – 7,275,435 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 96.36 |
| Shannon entropy | 0.04991 |
| G+C content | 0.45258 |
| Mean single sequence MFE | -21.62 |
| Consensus MFE | -20.45 |
| Energy contribution | -20.56 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7275343 92 - 27905053 GCCUUUUACAUAUCGCAGCCAGUGGCAGAGCAAAUCGUUUCUGUUAUUGUUUUUGUUGCUCUAUUCCCAUACACCGACGCUGUUGUUGCUGU ..............((((((((((((((((........))))))))))).....)))))...........(((.(((((....))))).))) ( -19.80, z-score = -0.52, R) >droSim1.chr3R_random 440643 91 - 1307089 -GCCUUUACAUAUCGCAGCUAGUGGCAGAGCAAAUCGUUUCUGUUAUUGUUUUUGUUGCUCUAUUCCCAUACACCGCCGCUGUUGUUGCUGU -.............(((((((((((((((((((.......(.......)......))))))).............)))))))..)))))... ( -21.73, z-score = -1.24, R) >droSec1.super_0 6432407 91 + 21120651 -GCCUUUACAUAUCGCAGCCAGUGGCAGAGCAAAUCGUUUCUGUUAUUGUUUUUGUUGCUCUAUUCCCAUACACCGCCGCUGUUGUUGCUGU -.............(((((((((((((((((((.......(.......)......))))))).............)))))))..)))))... ( -23.33, z-score = -1.89, R) >consensus _GCCUUUACAUAUCGCAGCCAGUGGCAGAGCAAAUCGUUUCUGUUAUUGUUUUUGUUGCUCUAUUCCCAUACACCGCCGCUGUUGUUGCUGU ..............(((((((((((((((((((.......(.......)......))))))).............)))))))..)))))... (-20.45 = -20.56 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:21 2011