| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,272,615 – 7,272,676 |
| Length | 61 |
| Max. P | 0.993507 |
| Location | 7,272,615 – 7,272,676 |
|---|---|
| Length | 61 |
| Sequences | 4 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 94.26 |
| Shannon entropy | 0.09310 |
| G+C content | 0.33607 |
| Mean single sequence MFE | -12.93 |
| Consensus MFE | -12.96 |
| Energy contribution | -12.78 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.47 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.62 |
| SVM RNA-class probability | 0.993507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7272615 61 - 27905053 AAUGUUUAAUUUACGUUGCGGGCGGCUGUGGGGAUAUGUAUUUUAUAUUUUUACGCUUUCU (((((.......)))))..(((.(((.(((((((((((.....)))))))))))))).))) ( -12.80, z-score = -1.73, R) >droSim1.chr3R 13419713 61 + 27517382 AAUGUUUAAUUUACGUUGGGGACGGCUGUGGGGAUAUAUAUUUUAUAUUUUUACGCUUUCU (((((.......)))))..(((.(((.(((((((((((.....)))))))))))))).))) ( -14.10, z-score = -3.52, R) >droSec1.super_0 6429702 61 + 21120651 AAUGUUUAAUUUACGUUGGGGACGGCUGUGGGGAUAUAUAUUUUAUAUUUUUACGCUUUCU (((((.......)))))..(((.(((.(((((((((((.....)))))))))))))).))) ( -14.10, z-score = -3.52, R) >droEre2.scaffold_4770 3398742 61 + 17746568 AAUGUUUAAUUUACAUUGGGGACGGCUGUGGUGAUAUAUAUUUUAUAUUUUUGCGCUUGCU (((((.......)))))(....)(((.(..(.((((((.....)))))).)..)))).... ( -10.70, z-score = -1.11, R) >consensus AAUGUUUAAUUUACGUUGGGGACGGCUGUGGGGAUAUAUAUUUUAUAUUUUUACGCUUUCU (((((.......)))))..(((.(((.(((((((((((.....)))))))))))))).))) (-12.96 = -12.78 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:20 2011