| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,271,020 – 7,271,116 |
| Length | 96 |
| Max. P | 0.995504 |
| Location | 7,271,020 – 7,271,116 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 92.26 |
| Shannon entropy | 0.14569 |
| G+C content | 0.41674 |
| Mean single sequence MFE | -29.37 |
| Consensus MFE | -25.36 |
| Energy contribution | -26.08 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.06 |
| Mean z-score | -3.32 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.81 |
| SVM RNA-class probability | 0.995504 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7271020 96 + 27905053 GUGACAGCUUUAAAACGGACGAACGAUGCUCUGUUUUAUUUUUGGCGGACAUCGUUUUUUGGUCAUUUUAUUUAGUGACCUCUUUGGCCAGUCUCC---- ..(((.(((........((.((((((((.((((((........)))))))))))))).))(((((((......))))))).....)))..)))...---- ( -28.10, z-score = -3.08, R) >droSim1.chr3R 13418099 96 - 27517382 GUGACAGCUUUAAAAAGGACGAACGAUGCUCUGUUUUAUUUUUGGCGGACAUCGUUUUUUGGUCAUUUUAUUUAGUGACCUCUUUGGCUAGUCUCC---- ..(((((((....(((((..((((((((.((((((........))))))))))))))...(((((((......)))))))))))))))).)))...---- ( -31.70, z-score = -4.53, R) >droSec1.super_0 6428089 96 - 21120651 GUGACAGCUUUAAAAAGGACGAACGAUGCUCUGUUUUAUUUUUGGCGGACAUCGUUUUUUGGUCAUUUUAUUUAGUGACCUCUUUGGCUAGUCUCC---- ..(((((((....(((((..((((((((.((((((........))))))))))))))...(((((((......)))))))))))))))).)))...---- ( -31.70, z-score = -4.53, R) >droYak2.chr3R 11304815 96 + 28832112 GUGACAGCUUUAAAAAGGACGAACGAUGCUCUGUUUUAUUUUUGGCGGACAUCGUUUUUUGGUCAUUUUAUUUAGUGACCUCUUUGGCCAGUCUCC---- ..(((.(((....(((((..((((((((.((((((........))))))))))))))...(((((((......)))))))))))))))..)))...---- ( -29.20, z-score = -3.38, R) >droEre2.scaffold_4770 3397130 96 - 17746568 GUGACAGCUUUAAAAAGGACGAACGAUGCUCUGUUUUAUUUUUGGCGGACAUCGUUUUUUGGUCAUUUUAUUUAGUGACCUCUUUGGCCAGUCUCC---- ..(((.(((....(((((..((((((((.((((((........))))))))))))))...(((((((......)))))))))))))))..)))...---- ( -29.20, z-score = -3.38, R) >droAna3.scaffold_13340 13705501 98 + 23697760 GUGACAGCUUUAAAAAGGACAACCGGCACUCUGUUGUUUUUUUGGCGGACUACGUUUC--GGUCAUUUUAUUUAGUGACCUCCUUGGCCAGCCAGCCUCC ......(((...(((((((((((.(.....).)))))))))))(((((.(((.(....--(((((((......)))))))..).))))).)))))).... ( -26.30, z-score = -1.02, R) >consensus GUGACAGCUUUAAAAAGGACGAACGAUGCUCUGUUUUAUUUUUGGCGGACAUCGUUUUUUGGUCAUUUUAUUUAGUGACCUCUUUGGCCAGUCUCC____ ..(((.(((.....(((((.((((((((.((((((........))))))))))))))...(((((((......)))))))))))))))..)))....... (-25.36 = -26.08 + 0.72)
| Location | 7,271,020 – 7,271,116 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 92.26 |
| Shannon entropy | 0.14569 |
| G+C content | 0.41674 |
| Mean single sequence MFE | -20.60 |
| Consensus MFE | -17.89 |
| Energy contribution | -17.89 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.771842 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7271020 96 - 27905053 ----GGAGACUGGCCAAAGAGGUCACUAAAUAAAAUGACCAAAAAACGAUGUCCGCCAAAAAUAAAACAGAGCAUCGUUCGUCCGUUUUAAAGCUGUCAC ----...((((((((.....))))).....(((((((((.....(((((((..(...............)..))))))).)).))))))).....))).. ( -20.36, z-score = -1.76, R) >droSim1.chr3R 13418099 96 + 27517382 ----GGAGACUAGCCAAAGAGGUCACUAAAUAAAAUGACCAAAAAACGAUGUCCGCCAAAAAUAAAACAGAGCAUCGUUCGUCCUUUUUAAAGCUGUCAC ----...(((.(((......(((((..........)))))....(((((((..(...............)..))))))).............)))))).. ( -20.46, z-score = -2.64, R) >droSec1.super_0 6428089 96 + 21120651 ----GGAGACUAGCCAAAGAGGUCACUAAAUAAAAUGACCAAAAAACGAUGUCCGCCAAAAAUAAAACAGAGCAUCGUUCGUCCUUUUUAAAGCUGUCAC ----...(((.(((......(((((..........)))))....(((((((..(...............)..))))))).............)))))).. ( -20.46, z-score = -2.64, R) >droYak2.chr3R 11304815 96 - 28832112 ----GGAGACUGGCCAAAGAGGUCACUAAAUAAAAUGACCAAAAAACGAUGUCCGCCAAAAAUAAAACAGAGCAUCGUUCGUCCUUUUUAAAGCUGUCAC ----...(((.(((......(((((..........)))))....(((((((..(...............)..))))))).............)))))).. ( -19.76, z-score = -1.68, R) >droEre2.scaffold_4770 3397130 96 + 17746568 ----GGAGACUGGCCAAAGAGGUCACUAAAUAAAAUGACCAAAAAACGAUGUCCGCCAAAAAUAAAACAGAGCAUCGUUCGUCCUUUUUAAAGCUGUCAC ----...(((.(((......(((((..........)))))....(((((((..(...............)..))))))).............)))))).. ( -19.76, z-score = -1.68, R) >droAna3.scaffold_13340 13705501 98 - 23697760 GGAGGCUGGCUGGCCAAGGAGGUCACUAAAUAAAAUGACC--GAAACGUAGUCCGCCAAAAAAACAACAGAGUGCCGGUUGUCCUUUUUAAAGCUGUCAC (..(((((((.(((...(..(((((..........)))))--....)...))).)))(((((.(((((.(.....).)))))..)))))..))))..).. ( -22.80, z-score = 0.27, R) >consensus ____GGAGACUGGCCAAAGAGGUCACUAAAUAAAAUGACCAAAAAACGAUGUCCGCCAAAAAUAAAACAGAGCAUCGUUCGUCCUUUUUAAAGCUGUCAC .......(((.(((......(((((..........)))))....(((((((..(...............)..))))))).............)))))).. (-17.89 = -17.89 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:20 2011