| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,266,558 – 7,266,608 |
| Length | 50 |
| Max. P | 0.982223 |
| Location | 7,266,558 – 7,266,608 |
|---|---|
| Length | 50 |
| Sequences | 6 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 78.00 |
| Shannon entropy | 0.43693 |
| G+C content | 0.44000 |
| Mean single sequence MFE | -12.47 |
| Consensus MFE | -7.45 |
| Energy contribution | -8.12 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.10 |
| SVM RNA-class probability | 0.982223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7266558 50 + 27905053 UUUAAUUAUCGGGAGUAUUGCAGUCGGUAAUUACUGCACAGCAUGCGGAC ..((((((((((..(.....)..))))))))))(((((.....))))).. ( -12.90, z-score = -2.32, R) >droEre2.scaffold_4770 3392340 50 - 17746568 UUUAAUUAUCGGAAGUAUUGCACUCGGUAAUUACUGCACAGCACGCGGAC ..((((((((((..(.....)..))))))))))((((.......)))).. ( -11.30, z-score = -1.90, R) >droYak2.chr3R 11299931 50 + 28832112 UUUAAUUAUCGGGAGUAUUGCAAUCGGUAAUUACUGCACAGCAUGCGGAC ..((((((((((..(.....)..))))))))))(((((.....))))).. ( -13.40, z-score = -2.92, R) >droSec1.super_0 6423235 50 - 21120651 UUUAAUUAUCGGGAGUAUUGCAAUCGGUAAUUACUGCACAGCAUGCGGAC ..((((((((((..(.....)..))))))))))(((((.....))))).. ( -13.40, z-score = -2.92, R) >droSim1.chr3R 13413217 50 - 27517382 UUUAAUUAUCGGGAGUAUUGCAAUCGGUAAUUACUGCACAGCAUGCGGAC ..((((((((((..(.....)..))))))))))(((((.....))))).. ( -13.40, z-score = -2.92, R) >droMoj3.scaffold_6540 24746703 50 + 34148556 UUCAUUCAUUUGUAACCCCGCAUCGAGCACCGAGUGAGCGGCUAAUGAGU ...(((((((.((...(.(((.(((.....)))))).)..)).))))))) ( -10.40, z-score = -0.75, R) >consensus UUUAAUUAUCGGGAGUAUUGCAAUCGGUAAUUACUGCACAGCAUGCGGAC ..((((((((((..(.....)..))))))))))((((.......)))).. ( -7.45 = -8.12 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:18 2011