| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,241,143 – 7,241,235 |
| Length | 92 |
| Max. P | 0.639921 |
| Location | 7,241,143 – 7,241,235 |
|---|---|
| Length | 92 |
| Sequences | 10 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 67.80 |
| Shannon entropy | 0.68526 |
| G+C content | 0.45583 |
| Mean single sequence MFE | -23.51 |
| Consensus MFE | -9.87 |
| Energy contribution | -9.37 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.46 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7241143 92 + 27905053 GCGAUGCAGUUUGUACUCACAAACUGGCUCUCCCGCCAGAACUCCUUUUUCGGAAACUAUGAGCGAAAGGUGAGUGAAAUUG-----AGUUUACAAA--------- ..(((.((((((.(((((((...(((((......)))))...(((((....(....)...))).))...)))))))))))))-----.)))......--------- ( -25.30, z-score = -1.69, R) >droSim1.chr3R 13391916 92 - 27517382 GCGAUGCAGUUUGUGCUCACCAACUGGCUCUCCCGCCAAAACUCCUUUUUCGGAAACUAUGAGCGAAAGGUGAGUGAAAUUG-----AGUUUACAAA--------- ..(((.((((((.((((((((...((((......))))....(((((....(....)...))).))..))))))))))))))-----.)))......--------- ( -24.50, z-score = -1.36, R) >droSec1.super_0 6397989 92 - 21120651 GCAAUGCAGUUUGUGCUCACCAACUGGCUCUCCCGCCAGAACUCCUUUUUCGGAAACUAUGAGCGAAAGGUGAGUAAAAUUG-----AGUUUACGAA--------- ......((((((.((((((((..(((((......)))))...(((((....(....)...))).))..))))))))))))))-----..........--------- ( -28.50, z-score = -2.62, R) >droYak2.chr3R 11274004 97 + 28832112 GCAAUGCAGUUCGUUCUCACCAACUGGCUCUCUCGCCAGAACUCCUUUUUCGGAAACUACGAGCGCAAGGUAAGUGAACUUACUUCCAAUUUCCAAA--------- ....(((.((((((.........(((((......)))))...(((......)))....)))))))))(((((((....)))))))............--------- ( -27.50, z-score = -3.53, R) >droEre2.scaffold_4770 3366393 92 - 17746568 GCAAUGCAGUUUGUUCUCACCAACUGGCUCUCCCGCCAGAACUCCUUUUUUGGCAACUAUGAGCGAAAGGUAAGUGAACUUG-----AAAUUCCAAA--------- ......(((((.((....)).)))))((((....(((((((......)))))))......))))(((...((((....))))-----...)))....--------- ( -21.50, z-score = -0.85, R) >droAna3.scaffold_13340 13107002 92 - 23697760 GCGAUGCAGUUCGUCCUCACUAACUGGCUUUCUCGCCAGAACUCCUUCUUCGGCAUAUAUGAACGAAAGGUAGUCCCUAUAGUUUUUUCAGC-------------- ((((......))))....((((.(((((......))))).(((((((..(((...........))))))).))).....)))).........-------------- ( -18.50, z-score = -0.22, R) >droWil1.scaffold_181089 8127120 106 - 12369635 GCCAUGCAAUUUGUCCUUACCAAUUGGCUGUCGCGGCAGAAUUCCUUCUUUGGCAUGUACGAGCGCAAGGUGAGAGCCGGCCACCGAGUAGCGUCAAGCAGGCAAA (((.(((...(((.(.((((....((((((.(((.(((.....((......))..)))....))))..(((....))))))))....)))).).)))))))))... ( -30.90, z-score = 0.75, R) >droVir3.scaffold_13047 16006709 106 - 19223366 GCCUUACAGUUUGUUCUGACUAAUUGGCUGUCGCGACAGAACUCCUUCUUUGGUGCAUACGAACGCAAAGUAUGUACAUUUCUCUAUAAACCUAUUAUUUUAUGGA .........((((((.((((.........)))).))))))............((((((((.........)))))))).....((((((((........)))))))) ( -21.70, z-score = -1.08, R) >droMoj3.scaffold_6540 13891490 94 - 34148556 GCAUUGCAGUUCGUUCUCACCAAUUGGCUGUCGCGUCAAAACUCCUUCUUCGGUGCAUACGAGCGAAAGGUGCGUACACAA----AUAAUCGUGAAAG-------- (((((...((((((...((((.....((....))((....)).........))))...))))))....)))))...(((..----......)))....-------- ( -22.00, z-score = -0.30, R) >droGri2.scaffold_15074 152955 100 - 7742996 GCCUUGCAGUUUGUUUUGACCAAUUGGCUGUCGCGUCACAACUCCUUUUUCGGUGCCUAUGAACGCAAAGUUAGUGUAUUAUAGUA-AUUCAUCCUAGUUA----- ((...(((((..(((......)))..))))).)).................((((.((((((((((.......)))).))))))..-...)))).......----- ( -14.70, z-score = 1.33, R) >consensus GCAAUGCAGUUUGUUCUCACCAACUGGCUCUCCCGCCAGAACUCCUUUUUCGGAAACUAUGAGCGAAAGGUGAGUGAAAUUG_____AAUUUACAAA_________ ........((((((.........(((((......)))))....((......)).....)))))).......................................... ( -9.87 = -9.37 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:17 2011