| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,222,701 – 7,222,792 |
| Length | 91 |
| Max. P | 0.801612 |
| Location | 7,222,701 – 7,222,792 |
|---|---|
| Length | 91 |
| Sequences | 11 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 73.96 |
| Shannon entropy | 0.48065 |
| G+C content | 0.34810 |
| Mean single sequence MFE | -13.14 |
| Consensus MFE | -10.20 |
| Energy contribution | -9.55 |
| Covariance contribution | -0.65 |
| Combinations/Pair | 1.31 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.801612 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7222701 91 + 27905053 ACAAUUGCGUUUUUUUAGUAGCAAGCGCGAUUCUCAAAAUUCCCAAUAACUUUUGGCCAAA---AAUCGAGUCACCGAACAAUAAACAAAAACC------------------ ......((((((.((....)).))))))(((((.........((((......)))).....---....))))).....................------------------ ( -13.27, z-score = -1.11, R) >droGri2.scaffold_15074 135485 87 - 7742996 AUGAUUGCGUUUUUUUAGUAGCGAACGCGAUUCACAAAAUUCC-AACAACUUUUGAACCCA---GAUGACAAAAAAGAAGUAACAAAAUGU--------------------- ..((((((((((.((....)).))))))))))...........-....((((((.......---...........))))))..........--------------------- ( -11.07, z-score = 0.13, R) >droMoj3.scaffold_6540 13873467 88 - 34148556 AUGAUUGCGUUUUUUUAGUAGCAAACGCGAUUCACAAAAUUCU-AAGCACUUUUGACCGAA---AACAAAAACUAAAAAGAAAACAAAAAGU-------------------- ....(((..((((((((((.((....))...............-......(((((......---..)))))))))))))))...))).....-------------------- ( -10.60, z-score = 0.16, R) >droVir3.scaffold_13047 15989262 109 - 19223366 AUGAUUGCGUUUUUUUAGUAGCAAACGCGAUUCACAAAAUUUUCAAACACUUUUGACCGAA---UAUGAAAAAUUAUAUUUAUUCAAAGAAAGAAAUACAACAACAAAAAGU ..((((((((((.((....)).))))))))))..................((((((..(((---(((((....))))))))..))))))....................... ( -16.30, z-score = -1.47, R) >droPer1.super_6 1618468 83 - 6141320 AUGAUUGCGUUUUUUUAGUAGCAAACGCGAUUCUCGAAAUUCCCAAUAACUUUUGGCCCGA---AAUCGAACA--AAAUCAAAACAAU------------------------ ..((((((((((.((....)).)))))))))).((((..(((((((......))))...))---).))))...--.............------------------------ ( -14.60, z-score = -1.32, R) >dp4.chr2 1593939 83 - 30794189 AUGAUUGCGUUUUUUUAGUAGCAAACGCGAUUCUCGAAAUUCCCAAUAACUUUUGGCCCGA---AAUCGAACA--AAAUCAAAACAAU------------------------ ..((((((((((.((....)).)))))))))).((((..(((((((......))))...))---).))))...--.............------------------------ ( -14.60, z-score = -1.32, R) >droSim1.chr3R 13373558 91 - 27517382 ACAAUUGCGUUUUUUUAGUAGCAAGCGCGAUUCUCAAAAUUCCCAAUAACUUUUGGCCACA---AAUCGAGUCACCGAACAAUAAACAAAAACC------------------ ......((((((.((....)).))))))(((((.........((((......)))).....---....))))).....................------------------ ( -13.27, z-score = -1.18, R) >droSec1.super_0 6379470 91 - 21120651 ACAAUUGCGUUUUUUUAGUAGCAAGCGCGAUUCUCAAAAUUCCCAAUAACUUUUGGCAACA---AAUCGAGUCACCGAACAAUAAACAAAAACC------------------ ..((((((((((.((....)).))))))))))...................((((....))---))(((......)))................------------------ ( -13.50, z-score = -1.18, R) >droYak2.chr3R 11255478 91 + 28832112 ACAAUUGCGUUUUUUUAGUAGCAAGCGCGAUUCUCAAAAUUCCCAACAACUUUUGGCCAAA---AGUCGAGUCACCGAACAAUAAACAAAAACC------------------ ..((((((((((.((....)).))))))))))..................(((((......---..(((......)))........)))))...------------------ ( -13.09, z-score = -0.59, R) >droEre2.scaffold_4770 3346369 91 - 17746568 ACAAUUGCGUUUUUUUAGUAGCAAGCGCGAUUCUCAAAAUUCCCAGCAACUUUUGGCCAAA---AAUCGAGUCACCGAACAAUAAACAAAAACC------------------ ......((((((.((....)).))))))(((((.........((((......)))).....---....))))).....................------------------ ( -12.07, z-score = -0.17, R) >droAna3.scaffold_13340 13085537 85 - 23697760 ACAAUUGCGUUUUUUUAGUAGCAAGCGCGAUUCUCAAAAUUCCCAACAACUUUUGGCCCAACAAAAUUGAAACACCGAA-AAUACC-------------------------- ..((((((((((.((....)).))))))))))..............(((.(((((......))))))))..........-......-------------------------- ( -12.20, z-score = -0.87, R) >consensus ACAAUUGCGUUUUUUUAGUAGCAAGCGCGAUUCUCAAAAUUCCCAAUAACUUUUGGCCAAA___AAUCGAAUCACCGAACAAUAAAAAAAAA____________________ ..((((((((((.((....)).))))))))))..........((((......))))........................................................ (-10.20 = -9.55 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:11 2011