| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,221,025 – 7,221,116 |
| Length | 91 |
| Max. P | 0.992385 |
| Location | 7,221,025 – 7,221,116 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 88.07 |
| Shannon entropy | 0.21856 |
| G+C content | 0.36347 |
| Mean single sequence MFE | -19.95 |
| Consensus MFE | -16.48 |
| Energy contribution | -17.63 |
| Covariance contribution | 1.15 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.90 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.54 |
| SVM RNA-class probability | 0.992385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7221025 91 + 27905053 UAAGUCAACAAAUCAAAGGGGCGGACCACAAAAGGGUCCGUCUCGAACGAUAAUUGGUUAAUAAAAGCGAAAUUAAUUGAAAAAACAGAAA------- ....((.....(((...((((((((((.......))))))))))....)))..(..((((((.........))))))..).......))..------- ( -22.50, z-score = -3.93, R) >droAna3.scaffold_13340 13083797 86 - 23697760 UAAGUCAACAAGUCUAGAGG-----CAACCAG-------GUCUCGAACGAUAAUUGGUUAAUAAAAGCGAAAUUUAUUGAAAAAAAAAAAAAAAGAAA ............(((.((((-----(......-------)))))...((((((((.(((......))).))..))))))..............))).. ( -11.20, z-score = -1.11, R) >droEre2.scaffold_4770 3344741 91 - 17746568 UAAGUCAACAAAUCAAAGGGGCGGACCACCAAAGGGUCCGUCUCGAACGAUAAUUGGUUAAUAAAAGCGAAAUUAAUUGAAAAAACAGAAA------- ....((.....(((...((((((((((.......))))))))))....)))..(..((((((.........))))))..).......))..------- ( -22.50, z-score = -3.34, R) >droYak2.chr3R 11253822 91 + 28832112 UAAGUCAACAAAUCAAAGGGGCGGACCACCAAAGGGUCCGUCACGAACGAUAAUUGGUUAAUAAAAGCGAAAUUAAUUGAGAAAACAGAAA------- ....((.....(((...(.((((((((.......)))))))).)....)))..(..((((((.........))))))..))).........------- ( -18.50, z-score = -2.02, R) >droSec1.super_0 6377819 91 - 21120651 UAAGUCAACAAAUCAAAGGGGCGGACCAGCAAAGGGUCCGUCUCGAACGAUAAUUGGUUAAUAAAAGCGAAAUUAAUUGAGAAAACAGAAA------- ....((.....(((...((((((((((.......))))))))))....)))..(..((((((.........))))))..))).........------- ( -22.50, z-score = -3.49, R) >droSim1.chr3R 13371910 91 - 27517382 UAAGUCAACAAAUCAAAGGGGCGGACCAGCAAAGGGUCCGUCUCGAACGAUAAUUGGUUAAUAAAAGCGAAAUUAAUUGAGAAAACAGAAA------- ....((.....(((...((((((((((.......))))))))))....)))..(..((((((.........))))))..))).........------- ( -22.50, z-score = -3.49, R) >consensus UAAGUCAACAAAUCAAAGGGGCGGACCACCAAAGGGUCCGUCUCGAACGAUAAUUGGUUAAUAAAAGCGAAAUUAAUUGAAAAAACAGAAA_______ ...........(((...((((((((((.......))))))))))....)))..(..((((((.........))))))..).................. (-16.48 = -17.63 + 1.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:10 2011