Locus 953

Sequence ID dm3.chr2L
Location 7,021,421 – 7,021,515
Length 94
Max. P 0.840196
window1299

overview

Window 9

Location 7,021,421 – 7,021,515
Length 94
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 98.31
Shannon entropy 0.03008
G+C content 0.32837
Mean single sequence MFE -19.66
Consensus MFE -18.00
Energy contribution -18.04
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.89
Structure conservation index 0.92
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.87
SVM RNA-class probability 0.840196
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 7021421 94 - 23011544
GCUGCUGGUCGCCUUAGUCAGUCAUAAAUAAAAUGAUUUUAUUUCUUAUAGGAAU--UAUUUUAUAUAGGUAUCAACGGCGUUAUUUGUCGUUGUC
((((((((.....)))).)))).....(((((((((((((..........)))))--))))))))........((((((((.....)))))))).. ( -20.20, z-score =  -2.07, R)
>droSim1.chr2L 6810873 94 - 22036055
GCUGCUGGUCGCCUUAGUCAGUCAUAAAUAAAAUGAUUUUAUUUCUUAUAGGAAU--UAUUUUAUAUAGGUAUCAACGGCGUUAUUUGUCGUUGUC
((((((((.....)))).)))).....(((((((((((((..........)))))--))))))))........((((((((.....)))))))).. ( -20.20, z-score =  -2.07, R)
>droSec1.super_3 2547052 94 - 7220098
GCUGCUGGUCGCCUUAGUCAGUCAUAAAUAAAAUGAUUUUAUUUCUUAUAGGAAU--UAUUUUAUAUAGGUAUCAACGGCGUUAUUUGUCGUUUUC
((((.((((.((((..(.....)....(((((((((((((..........)))))--))))))))..)))))))).))))................ ( -17.40, z-score =  -1.33, R)
>droYak2.chr2L 16430449 96 + 22324452
GCCGCUGGUCGCCUUAGUCAGUCAUAAAUAAAAUGAUUUUAUUUCUUAUAGGAAUUAUAUUUUAUAUAGGUAUCAACGGCGUUAUUUGUCGUUGUC
((((((((.(......)))))).....((((((((.....(((((.....)))))..))))))))...)))..((((((((.....)))))))).. ( -20.30, z-score =  -1.90, R)
>droEre2.scaffold_4929 15930324 94 - 26641161
GCUGCUGGUCGCCUUAGUCAGUCAUAAAUAAAAUGAUUUUAUUUCUUAUAGGAAU--UAUUUUAUAUAGGUAUCAACGGCGUUAUUUGUCGUUGUC
((((((((.....)))).)))).....(((((((((((((..........)))))--))))))))........((((((((.....)))))))).. ( -20.20, z-score =  -2.07, R)
>consensus
GCUGCUGGUCGCCUUAGUCAGUCAUAAAUAAAAUGAUUUUAUUUCUUAUAGGAAU__UAUUUUAUAUAGGUAUCAACGGCGUUAUUUGUCGUUGUC
((((((((.(......)))))).....((((((((.....(((((.....)))))..))))))))...)))..((((((((.....)))))))).. (-18.00 = -18.04 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:47 2011