| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,214,664 – 7,214,756 |
| Length | 92 |
| Max. P | 0.774094 |
| Location | 7,214,664 – 7,214,756 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 97.12 |
| Shannon entropy | 0.03950 |
| G+C content | 0.50179 |
| Mean single sequence MFE | -18.10 |
| Consensus MFE | -17.73 |
| Energy contribution | -17.73 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.774094 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7214664 92 + 27905053 -CAGACACACAUUCACAUACAUAUGCGACCACAGCCCCACCAACACUCAGACUCCUGGCGGGCUAAUUAGUUUGUUUGCCAGGAUACAUUCAG -...........((.(((....))).))........................(((((((((((..........)))))))))))......... ( -18.30, z-score = -1.46, R) >droSec1.super_0 6371538 93 - 21120651 ACACACACACAUUCACAGACAUAUGCGACCACAGCCCCACCGACACUCAGACUCCUGGCGGGCUAAUUAGUUUGUUUGCCAGGAUACAUUCAG ............((.((......)).))........................(((((((((((..........)))))))))))......... ( -18.00, z-score = -1.22, R) >droSim1.chr3R 13365615 92 - 27517382 -CACACACACAUUCACAGACAUAUGCGACCACAGCCCCACCGACACUCAGACUCCUGGCGGGCUAAUUAGUUUGUUUGCCAGGAUACAUUCAG -...........((.((......)).))........................(((((((((((..........)))))))))))......... ( -18.00, z-score = -1.15, R) >consensus _CACACACACAUUCACAGACAUAUGCGACCACAGCCCCACCGACACUCAGACUCCUGGCGGGCUAAUUAGUUUGUUUGCCAGGAUACAUUCAG ............((.((......)).))........................(((((((((((..........)))))))))))......... (-17.73 = -17.73 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:08 2011