| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,193,669 – 7,193,762 |
| Length | 93 |
| Max. P | 0.971209 |
| Location | 7,193,669 – 7,193,762 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.11 |
| Shannon entropy | 0.47267 |
| G+C content | 0.45462 |
| Mean single sequence MFE | -30.99 |
| Consensus MFE | -14.25 |
| Energy contribution | -15.04 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.971209 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7193669 93 + 27905053 CACUCGAAAG-UAUCGCAC-GGAUGUCG-UAUCUAUGGA-CCGCCAUAUGGCGAGCAAACGGCGAUAUC---UGUGAGAGUGUUUCCAUGUACGAGUGAC----------- ((((((....-..((.(((-((((((((-(.......(.-.((((....))))..).....))))))))---)))).))(((....)))...))))))..----------- ( -36.10, z-score = -3.32, R) >droAna3.scaffold_13340 13065406 102 - 23697760 CACUCGAAAG-UAUCGCUC-GGAUGUCG-UAUCUAC--A-CCGCCAUAUGGCGACCAAACGCCGAUAUC---UGUGAGAGUGUUUUCAUGUACUACAGUACAAGUACUAUC (((((((...-..)).(.(-((((((((-.......--.-.((((....)))).........)))))))---)).).)))))......(((((....)))))......... ( -28.27, z-score = -1.74, R) >droEre2.scaffold_4770 3326574 93 - 17746568 CACUCGAAAG-UAUCGCAC-GGAUGUCG-UAUCUAUGGA-CCGCCAUAUGGCGAGUAAACGACGAUAUC---UGUGAGAGUGUUUCCAUGUACGAGUAUC----------- .(((((....-..((.(((-((((((((-(........(-(((((....)))).)).....))))))))---)))).))(((....)))...)))))...----------- ( -33.32, z-score = -2.94, R) >droYak2.chr3R 11235650 93 + 28832112 CACUCGAAAG-UAUCGCGC-GGAUGUCG-UAUCUAUGGA-CCGCCAUAUGGCGAGCAAACGGCGAUAUC---UGUGAGAGUGUUUCCAUGUACGAGUAUC----------- .(((((....-..((.(((-((((((((-(.......(.-.((((....))))..).....))))))))---)))).))(((....)))...)))))...----------- ( -33.00, z-score = -2.15, R) >droSec1.super_0 6359344 93 - 21120651 CACUCGAAAG-UAUCGCAC-GGAUGUCG-UAUCUAUGGA-CCGCCAUAUGGCGAACAAACGGCGAUAUC---UGUGAGAGUGUUUCCAUGUACGAGUAUC----------- .(((((....-..((.(((-((((((((-(.....((..-.((((....))))..))....))))))))---)))).))(((....)))...)))))...----------- ( -33.10, z-score = -2.83, R) >droSim1.chr3R 13356768 93 - 27517382 CACUCGAAAG-UAUCGCAC-GGAUGUCG-UAUCUAUGGA-CCGCCAUAUGGCGAACAAACGGCGAUAUC---UGUGAGAGUGUUUCCAUGUACGAGUAUC----------- .(((((....-..((.(((-((((((((-(.....((..-.((((....))))..))....))))))))---)))).))(((....)))...)))))...----------- ( -33.10, z-score = -2.83, R) >droWil1.scaffold_181089 8083703 93 - 12369635 CACUUGAAAGUAGUCACAUGAAUUGUCG-UAUCUAUUGAAC-GCCAUAUGGUGUUGAAUU--GUAUCG-----AUAAAAGUAUUUCCAUGUAUCAACUAAUA--------- ........(((.(..(((((..((((((-(((..(((.(((-(((....)))))).))).--))).))-----))))..(.....))))))..).)))....--------- ( -19.70, z-score = -1.45, R) >droVir3.scaffold_13047 15966162 102 - 19223366 CACUUGAGAGCUGCUGAA--AGUUAUUGAUAUCUAUAGAGCCGCCAUAUGGCGACUAAAUAGGUAUCGCGGCUAUAAAAGUAUUUUCAUGUAGUCAACGCUAUC------- .((((...(((((((...--.).....(((((((((..((.((((....)))).))..)))))))))))))))....))))........(((((....))))).------- ( -31.30, z-score = -2.92, R) >consensus CACUCGAAAG_UAUCGCAC_GGAUGUCG_UAUCUAUGGA_CCGCCAUAUGGCGAGCAAACGGCGAUAUC___UGUGAGAGUGUUUCCAUGUACGAGUAUC___________ (((((........(((((...(((((((...((....))..((((....)))).........)))))))...))))))))))............................. (-14.25 = -15.04 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:07 2011