| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,190,001 – 7,190,108 |
| Length | 107 |
| Max. P | 0.589212 |
| Location | 7,190,001 – 7,190,108 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 92.88 |
| Shannon entropy | 0.12364 |
| G+C content | 0.57593 |
| Mean single sequence MFE | -41.76 |
| Consensus MFE | -33.34 |
| Energy contribution | -34.46 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589212 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7190001 107 + 27905053 UCAUCCACCGCGGAGGAGGUGGACUCAAUGGGUUGGGC------UGCGUUGGAUUGCUGGCAUGGGGGGUUACUGCCGACUGGCCGGCAAGUGGUUGUUAAGUCUGAUUCACG ...((((((........)))))).....(((((..(((------((((.....((((((((.(((..(((....)))..))))))))))).....)))..))))..))))).. ( -42.20, z-score = -1.53, R) >droSim1.chr3R 13353088 105 - 27517382 UCAUCCACCGCGGAGGAGGUGGACUCAGUGGGUUGGGC------AGCGAUGGAUUGCUGGAAUGGGG--UUACUGCCGACUGGCCGGCAAGUGGUUGUUAAGUCUGAUUCACG ...((((((........))))))....((((((..(((------((((((.(.(((((((...(.((--(....)))..)...))))))).).))))))..)))..)))))). ( -43.10, z-score = -2.42, R) >droSec1.super_0 6355664 105 - 21120651 UCAUCCACCGCGGAGGAGGUGGACAUAGUGGGUUGGGC------AGCGAUGGAUUGCUGGAAUGGGG--UUACUGCCGACUGGCCGGCAAGUGGUUGUUAAGUCUGAUUCACG ...((((((........))))))....((((((..(((------((((((.(.(((((((...(.((--(....)))..)...))))))).).))))))..)))..)))))). ( -43.10, z-score = -2.91, R) >droYak2.chr3R 11231796 111 + 28832112 UCAUCCACAGCGGAGGAGGUGGAUUCAGUGGGUUGGGCCACUGCGGCGAUGGAUUGCUGGAAUGGGG--UUACUGCCGACUGGCCGGCAAGUGGUUGUUAAGUCUGAUUCACG ..((((((..(....)..))))))...((((((..(((....(((((.((...(((((((...(.((--(....)))..)...))))))))).)))))...)))..)))))). ( -40.40, z-score = -0.95, R) >droEre2.scaffold_4770 3322932 105 - 17746568 UCAUCCACCGCGGAGGAGGUGUAUUCAGUGGGUUGGGC------UGCGAUGGAUUGCUGGUAUGGGG--UUACUGCCGACUGGCCGGCAAGUGGUUGUUAAGUCUGAUUCACG .....((((........))))......((((((..(((------((((((.(.((((((((....((--(....))).....)))))))).).)))))..))))..)))))). ( -40.00, z-score = -1.67, R) >consensus UCAUCCACCGCGGAGGAGGUGGACUCAGUGGGUUGGGC______AGCGAUGGAUUGCUGGAAUGGGG__UUACUGCCGACUGGCCGGCAAGUGGUUGUUAAGUCUGAUUCACG ...((((((........))))))....((((((..(((......((((((.(.(((((((..(((.(......).))).....))))))).).))))))..)))..)))))). (-33.34 = -34.46 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:03 2011