| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,187,388 – 7,187,478 |
| Length | 90 |
| Max. P | 0.657029 |
| Location | 7,187,388 – 7,187,478 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 83.35 |
| Shannon entropy | 0.32700 |
| G+C content | 0.34715 |
| Mean single sequence MFE | -14.84 |
| Consensus MFE | -12.90 |
| Energy contribution | -12.91 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.04 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.657029 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7187388 90 - 27905053 -----GCGAA--CAACAAGAAAUGCAAACAGAAAAU--AAAAUUUUCGUUGAAAAGAAAUUAAAAAUCUGCAAGAUUUGCAUUUUGACUCAGACCCCCG-------------------- -----.....--......(((((((((((.((((((--...)))))).(((...(((.........))).)))).))))))))))..............-------------------- ( -12.40, z-score = -1.27, R) >droSim1.chr3R 13350518 90 + 27517382 -----GCGAA--CAACAAGAAAUGCAAACAGAAAAU--AAAAUUUUCGUUGAAAAGAAAUUAAAAAUCUGCAAGAUUUGCAUUUUGACUCAGACCCCCG-------------------- -----.....--......(((((((((((.((((((--...)))))).(((...(((.........))).)))).))))))))))..............-------------------- ( -12.40, z-score = -1.27, R) >droSec1.super_0 6353109 90 + 21120651 -----GCGAA--CAACAAGAAAUGCAAACAGAAAAU--AAAAUUUUCGUUGAAAAGAAAUUAAAAAUCUGCAAGAUUUGCAUUUUGACUCAGACCCCCG-------------------- -----.....--......(((((((((((.((((((--...)))))).(((...(((.........))).)))).))))))))))..............-------------------- ( -12.40, z-score = -1.27, R) >droYak2.chr3R 11229134 90 - 28832112 -----GCGAA--CAACAAGAAAUGCAAACAGAAAAU--AAAAUUUUCGUUGAAAAGAAAUUAAAAAUCUGCAAGAUUUGCAUUUUGACUCAGACCCCCG-------------------- -----.....--......(((((((((((.((((((--...)))))).(((...(((.........))).)))).))))))))))..............-------------------- ( -12.40, z-score = -1.27, R) >droEre2.scaffold_4770 3320340 90 + 17746568 -----GCGAA--CAACAAGAAAUGCAAACAGAAAAU--AAAAUUUUCGUUGAAAAGAAAUUAAAAAUCUGCAAGAUUUGCAUUUUGACUCAGGCCCCCG-------------------- -----((...--......(((((((((((.((((((--...)))))).(((...(((.........))).)))).)))))))))).......)).....-------------------- ( -12.49, z-score = -0.47, R) >droAna3.scaffold_13340 13059096 90 + 23697760 -----GCGAA--CAACAAGAAAUGCAAACAGAAAAU--AAAAUUUUCGUUGAAAAGAAAUUAAAAAUCUGCAAGAUUUGCAUUUUGACUCAGACCCCAG-------------------- -----.....--......(((((((((((.((((((--...)))))).(((...(((.........))).)))).))))))))))..............-------------------- ( -12.40, z-score = -1.10, R) >dp4.chr2 1568220 103 + 30794189 -----ACGAA-GCAGCAAGAAAUGCAAACAGAAAAUACAAAAUUUUCGUUGAAAAGAAAUUAAAAAUCUGCAAGAUUUGCAUUUUGACUCAGACCCGGGCAUGCGGCAU---------- -----.....-((.(((.(((((((((((.((((((.....)))))).(((...(((.........))).)))).))))))))))(.(((......)))).))).))..---------- ( -20.90, z-score = -1.03, R) >droPer1.super_6 1592681 103 + 6141320 -----ACGAA-GCAGCAAGAAAUGCAAACAGAAAAUACAAAAUUUUCGUUGAAAAGAAAUUAAAAAUCUGCAAGAUUUGCAUUUUGACUCAGACCCGGGCAUGCGGCAU---------- -----.....-((.(((.(((((((((((.((((((.....)))))).(((...(((.........))).)))).))))))))))(.(((......)))).))).))..---------- ( -20.90, z-score = -1.03, R) >droWil1.scaffold_181089 8077156 117 + 12369635 GCGAGACAAGAACAACAAGAAGUGCAAACAGAAAAU--AAAAUUUUCGUUGAAAAGAAAUUAAAAAUCUGCAAGAUUUGCAUUUUAACUGAGACCGACUCCUUCAACAAUCUCCCCAAA ..((((............(((((((((((.((((((--...)))))).(((...(((.........))).)))).))))))))))....(((.....))).........))))...... ( -16.90, z-score = -0.95, R) >droVir3.scaffold_13047 15956866 102 + 19223366 -----GCGCA--CAACAAGAAAUGCAAACAGAAAAU--AAAAUUUUCGUUGAAAAGAAAUUAAAAAUCUGCAAGAUUUGCAUUUUGCCUCAGACCAGCAGAAG----ACCCAGAC---- -----((...--......(((((((((((.((((((--...)))))).(((...(((.........))).)))).))))))))))...........)).....----........---- ( -14.25, z-score = -0.38, R) >droMoj3.scaffold_6540 13840777 109 + 34148556 -----GCCAA--CAACAAGAAAUGCAAACAGAAAAU--AAAA-UUUCGUUGAAAAGAAAUUAAAAAUCUGCAAGAUUUGCAUUUUGCCUCAGACCAGCAGCAGCCACGCCCAUACUUUG -----((...--......((((((((((((((....--..((-((((........)))))).....)))).....))))))))))...........)).((......)).......... ( -15.75, z-score = -0.27, R) >consensus _____GCGAA__CAACAAGAAAUGCAAACAGAAAAU__AAAAUUUUCGUUGAAAAGAAAUUAAAAAUCUGCAAGAUUUGCAUUUUGACUCAGACCCCCG____________________ ..................(((((((((((.((((((.....)))))).(((...(((.........))).)))).)))))))))).................................. (-12.90 = -12.91 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:02 2011