| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,183,224 – 7,183,279 |
| Length | 55 |
| Max. P | 0.998534 |
| Location | 7,183,224 – 7,183,279 |
|---|---|
| Length | 55 |
| Sequences | 6 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 95.93 |
| Shannon entropy | 0.07898 |
| G+C content | 0.27687 |
| Mean single sequence MFE | -8.16 |
| Consensus MFE | -8.30 |
| Energy contribution | -8.16 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.07 |
| Mean z-score | -3.37 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.39 |
| SVM RNA-class probability | 0.998534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7183224 55 + 27905053 UUCAAAUGACAGAUUAUCCCCAUAAAUAUUUUAAUUUGAUUCAUUUGCAACCACU-- ..((((((((((((((...............)))))))..)))))))........-- ( -8.16, z-score = -3.51, R) >droSim1.chr3R 13346402 55 - 27517382 UUCAAAUGACAGAUUAUACCCAUAAAUAUUUUAAUUUGAUUCAUUUGCAACCACU-- ..((((((((((((((...............)))))))..)))))))........-- ( -8.16, z-score = -3.85, R) >droSec1.super_0 6349021 55 - 21120651 UUCAAAUGACAGAUUAUGCCCAUAAAUAUUUUAAUUUGAUUCAUUUGCAACCACU-- ..((((((((((((((...............)))))))..)))))))........-- ( -8.16, z-score = -2.66, R) >droYak2.chr3R 11220177 55 + 28832112 UUCAAAUGACAGAUUAUCCCCAUAAAUAUUUUAAUUUGAUUCAUUUGCAACCACU-- ..((((((((((((((...............)))))))..)))))))........-- ( -8.16, z-score = -3.51, R) >droEre2.scaffold_4770 3316153 55 - 17746568 UUCAAAUGACAGAUUAUCCCCAUAAAUAUUUUAAUUUGAUUCAUUUGCAACCACU-- ..((((((((((((((...............)))))))..)))))))........-- ( -8.16, z-score = -3.51, R) >droAna3.scaffold_13340 13054815 57 - 23697760 UUCAAGUGACAGAUUAUCCCCAUAAAUAUUUUAAUUUGAUUCAUUUGCAACCCCACU ..((((((((((((((...............)))))))..))))))).......... ( -8.16, z-score = -3.21, R) >consensus UUCAAAUGACAGAUUAUCCCCAUAAAUAUUUUAAUUUGAUUCAUUUGCAACCACU__ ..((((((((((((((...............)))))))..))))))).......... ( -8.30 = -8.16 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:01 2011