| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,174,067 – 7,174,158 |
| Length | 91 |
| Max. P | 0.981687 |
| Location | 7,174,067 – 7,174,158 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 88.25 |
| Shannon entropy | 0.21008 |
| G+C content | 0.37356 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -19.92 |
| Energy contribution | -19.60 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.08 |
| SVM RNA-class probability | 0.981687 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7174067 91 - 27905053 AUUCUAACGAAAUUAAGUC------AAAACUCAGCAAAUCAGUUUGUCUUACAAGUGUGCGGCGAACGCUUUGCUGGGAUUUAGAUAAAUUAAUCCU .(((....))).....(((------.((((((((((((...(((((((.(((....))).)))))))..))))))))).))).)))........... ( -26.40, z-score = -3.81, R) >droSim1.chr3R 13337298 97 + 27517382 AUUCUAACGAUAUUAAGUCCAUCUACAGACUCAGCAAAUCAGUUUGUCUUACAAGUGUGCGGCGAACGCUUUGCUGGGAUUUAGAUAAAUUAAUCCU ..((....))..((((((((.((....))..(((((((...(((((((.(((....))).)))))))..)))))))))))))))............. ( -26.60, z-score = -3.06, R) >droSec1.super_0 6339906 97 + 21120651 AUUCUAACGAUAUUAAGUCCAUCUACAAACUCAGCAAAUCAGUUUGUCUUACAAGUGUGCGGCGAACGCUUUGCUGGGAUUUAAAUAAAUUAAUCCU ..((....))..((((((((...........(((((((...(((((((.(((....))).)))))))..)))))))))))))))............. ( -24.60, z-score = -3.38, R) >droYak2.chr3R 11210760 97 - 28832112 AUUCUAACGAACUUAAGUCCAUGGAAAAAGUCUACAAAUCAGUUUGCCUUACAAGUGUGCGGCGAACGCUUUGCUGAGAUUUAGAAAAAAUAAUCCU .(((....))).(((((((((((((.....))))((((...(((((((.(((....))).)))))))..)))).)).)))))))............. ( -20.40, z-score = -1.35, R) >droEre2.scaffold_4770 3306944 97 + 17746568 AUUCUAACAAGCUUAAGUCCAUCGGAAAAGUUGACAAAUCAGUUUGCCUUACAAGUGUGCGGCGAACGCUUUGCUGAGAUUUAGAAAAACUAAUCCU ............(((((((..((((.((((((((....)))(((((((.(((....))).)))))))))))).)))))))))))............. ( -23.00, z-score = -1.51, R) >consensus AUUCUAACGAAAUUAAGUCCAUCGAAAAACUCAGCAAAUCAGUUUGUCUUACAAGUGUGCGGCGAACGCUUUGCUGGGAUUUAGAUAAAUUAAUCCU ............(((((((...........((((((((...(((((((.(((....))).)))))))..)))))))))))))))............. (-19.92 = -19.60 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:06:00 2011