| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,154,205 – 7,154,310 |
| Length | 105 |
| Max. P | 0.594279 |
| Location | 7,154,205 – 7,154,310 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 90.28 |
| Shannon entropy | 0.18487 |
| G+C content | 0.60864 |
| Mean single sequence MFE | -44.53 |
| Consensus MFE | -38.72 |
| Energy contribution | -39.70 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.594279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7154205 105 - 27905053 AUGUGCCUUGCCUGCUGUCUGCUGCCUG----CUGCUGCCUGAUCCUGGCAGCACGGCUCAGUUCGAUUCAGGACAGGCCAGGACAGGGAGACAGCGAGAACCCGAGGA .....(((((.(((((((((.((.(((.----.(((((((.......))))))).((((..((((......)))).)))))))...)).))))))).))....))))). ( -46.30, z-score = -1.28, R) >droSim1.chr3R 13317555 105 + 27517382 AUGUGCCUUGCCUGCUGUCUGCUGCCUG----CUGCUGCCUGAUCCUGGCAGCACGGCUCAGUUCGAUUCAGGACAGGCCAGGACAGGGAGACAGCGAGAACCCGAGGA .....(((((.(((((((((.((.(((.----.(((((((.......))))))).((((..((((......)))).)))))))...)).))))))).))....))))). ( -46.30, z-score = -1.28, R) >droSec1.super_0 6320107 105 + 21120651 AUGUGCCUUGCCUGCUGUCUGCUGCCUG----CUGCUGCCUGAUCCUGGCAGCACGGCUCAGUUCGAUUCAGGACAGGCCAGGACAGGGAGACAGCGAGAACCCGAGGA .....(((((.(((((((((.((.(((.----.(((((((.......))))))).((((..((((......)))).)))))))...)).))))))).))....))))). ( -46.30, z-score = -1.28, R) >droYak2.chr3R 11190444 105 - 28832112 AUGUGCCUUGCCUGCUGUCUGCUGCCUG----CUGCUGCCUGAUCCUGGCAGCACGGCUCAGUUCGAUUCAGGACAGGCCAGGACAGGGAGACAGCGAGAACCCGAGGA .....(((((.(((((((((.((.(((.----.(((((((.......))))))).((((..((((......)))).)))))))...)).))))))).))....))))). ( -46.30, z-score = -1.28, R) >droEre2.scaffold_4770 3281833 105 + 17746568 AUGUGCCUUGCCUGCUGUCUGCUGCCUG----CUGCUGCCUGAUCCUGGCAGCACGGCUCAGUUCGAUUCAGGACAGGCCAGGACAGGGAGACAGCGAGAACCCGAGGA .....(((((.(((((((((.((.(((.----.(((((((.......))))))).((((..((((......)))).)))))))...)).))))))).))....))))). ( -46.30, z-score = -1.28, R) >droAna3.scaffold_13340 13026685 106 + 23697760 AUUGGCCUUGCCUUCUGUUUUCUGCCUGAUGCCUGCAGCCUGAUCCUGGCAGCACGGCUGAACAGAACGUAACGGAACAGAGGACAAGGAGAC---GAGAACCCGAGGA .(((.(((((.((((((((((.((((((..((((((.(((.......))).))).)))....)))...)))..)))))))))).)))))...)---))........... ( -35.70, z-score = -1.52, R) >consensus AUGUGCCUUGCCUGCUGUCUGCUGCCUG____CUGCUGCCUGAUCCUGGCAGCACGGCUCAGUUCGAUUCAGGACAGGCCAGGACAGGGAGACAGCGAGAACCCGAGGA .....(((((.(((((((((.((.(((......(((((((.......))))))).((((..((((......)))).)))))))...)).))))))).))....))))). (-38.72 = -39.70 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:58 2011