| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,149,005 – 7,149,076 |
| Length | 71 |
| Max. P | 0.739497 |
| Location | 7,149,005 – 7,149,076 |
|---|---|
| Length | 71 |
| Sequences | 5 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 91.03 |
| Shannon entropy | 0.15397 |
| G+C content | 0.59241 |
| Mean single sequence MFE | -18.41 |
| Consensus MFE | -17.61 |
| Energy contribution | -17.61 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7149005 71 - 27905053 CAACGACGGCGACGUCCUGGCGUCCCAAGCUACAUACGCUCAUUCAUUCAUCGCCUUCGGGUCGCCAACGA ....((((....)))).(((((.(((.(((.......)))............(....)))).))))).... ( -20.50, z-score = -1.24, R) >droSim1.chr3R 13310188 68 + 27517382 ---CAACGGCGACGUCCUGGCGUCCCAAGCUACACACACUCAUUCAUUCAUCGCCUUCGGGUCGCCAACGA ---....((((((((....)))))............................(((....))).)))..... ( -17.70, z-score = -1.40, R) >droSec1.super_0 6314935 68 + 21120651 ---CAACGGCGACGUCCUGGCGUCCCAAGCUACACACACUCAUUCAUUCAUCGCCUUCGGGUCGCCAACGA ---....((((((((....)))))............................(((....))).)))..... ( -17.70, z-score = -1.40, R) >droYak2.chr3R 11185135 67 - 28832112 ----CUGGGCGACGUCCUGGCGUCCCAAGCUACGUACACUCAUUCAUUCAUCGCCUUCGGGUCGCCAACGA ----...(((((((((.((((.......)))).).)).................(....)))))))..... ( -17.80, z-score = -0.29, R) >droEre2.scaffold_4770 3276691 67 + 17746568 ----CAGGGCGACGUCCUGGCGUCCCAAGCUACAUACACUCAUUCUCUCAACGCCUUCGGGUCGCCAACGA ----...((((((.(...(((((...........................)))))...).))))))..... ( -18.33, z-score = -1.11, R) >consensus ___CAACGGCGACGUCCUGGCGUCCCAAGCUACAUACACUCAUUCAUUCAUCGCCUUCGGGUCGCCAACGA .......((((((.(...((((.............................))))...).))))))..... (-17.61 = -17.61 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:57 2011