| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,147,472 – 7,147,548 |
| Length | 76 |
| Max. P | 0.760441 |
| Location | 7,147,472 – 7,147,548 |
|---|---|
| Length | 76 |
| Sequences | 5 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 87.73 |
| Shannon entropy | 0.21888 |
| G+C content | 0.47571 |
| Mean single sequence MFE | -17.17 |
| Consensus MFE | -13.36 |
| Energy contribution | -13.52 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.760441 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7147472 76 + 27905053 ACUUUUAUAUUUAAUUCCCGUUGAGCUGCUGCUGUCCUUGCCACCUGUUCCGUGUACUGUGAGUUCAGGUGUAAGG .......................(((....)))..((((((.(((((..(((.......)).)..))))))))))) ( -16.30, z-score = -1.10, R) >droSim1.chr3R 13308603 76 - 27517382 ACUCUUAUAUUUAAUUCCCGUUGAGCUGCUUCUGUCCUUGCCACCUGUUUCAUGUCCUGUGAGUUCAGGUGUAAGG .(((..................)))..........((((((.(((((.(((((.....)))))..))))))))))) ( -17.77, z-score = -2.39, R) >droSec1.super_0 6313364 70 - 21120651 ACUCUUAUAUUUAAUUCCCGUUGAGCUG------UCCUUGCCACCUGUUCCAUGUCCUGUGAGUUCAGGUGUAAGG .(((..................)))...------.((((((.(((((..((((.....))).)..))))))))))) ( -16.77, z-score = -2.52, R) >droYak2.chr3R 11183521 74 + 28832112 GCUCCUGUAUUUAAUUCCCGUUGAGCUGCUGCUGUCCUUGCCACCUGUUCCCUGUC--GUGAGCUCAGGUGUAAGG ((....(((((((((....)))))).))).))...((((((.(((((..(.(....--..).)..))))))))))) ( -17.40, z-score = -1.22, R) >droEre2.scaffold_4770 3275126 74 - 17746568 ACUCUUGUAUUAAAUUCCCGUUGAGUUACUGCUGUCCUUGCCACCUGUUCCCUGAC--GUGAGUUCAGGUGUAAGG ......(((...(((((.....)))))..)))...((((((.(((((......(((--....)))))))))))))) ( -17.60, z-score = -1.95, R) >consensus ACUCUUAUAUUUAAUUCCCGUUGAGCUGCUGCUGUCCUUGCCACCUGUUCCAUGUCCUGUGAGUUCAGGUGUAAGG ...................................((((((.(((((..((((.....))).)..))))))))))) (-13.36 = -13.52 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:57 2011