| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,145,073 – 7,145,175 |
| Length | 102 |
| Max. P | 0.635660 |
| Location | 7,145,073 – 7,145,175 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 74.88 |
| Shannon entropy | 0.46152 |
| G+C content | 0.43713 |
| Mean single sequence MFE | -19.88 |
| Consensus MFE | -12.11 |
| Energy contribution | -13.50 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.635660 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7145073 102 + 27905053 UUGCAUACUCCGCCAUUGUCUUCGCGUUAAGUGAGACAAAAGUUGACUUAAAA--UCCCAAAAACCGAAGGGAAUAACUACAUGCUGGCAGGCAGAGGCACACC----- .(((...((((((((((((((.(((.....)))))))))..............--((((..........))))............)))).)).))..)))....----- ( -25.50, z-score = -1.32, R) >droSim1.chr3R 13306239 91 - 27517382 -UUCAUUCUCCGCCAUUGUCUUCGCGUUAAGUGAGACAAAAGUUGACUUAAAA--UCCCAAAAACCGAAGGGAAUAACUACAUGCAGGCACACC--------------- -..........(((.((((((.(((.....)))))))))..............--((((..........)))).............))).....--------------- ( -20.00, z-score = -1.89, R) >droSec1.super_0 6311013 91 - 21120651 -UUCAUACUCCGCCAUUGUCUUCGCGUUAAGUGAGACAAAAGUUGACUUAAAA--UCCCAAAAACCGAAGGGAAUAACUACAUGCAGGCACACC--------------- -..........(((.((((((.(((.....)))))))))..............--((((..........)))).............))).....--------------- ( -20.00, z-score = -2.04, R) >droYak2.chr3R 11181206 104 + 28832112 ---CAUACACCGCCAUUGUCUUCGCGUUAAGUGAGACAAAAGUUGACUUAAAA--UCCCAAAAACCGAAGGGAAUAACUACAUGCAGGCAGGCAGGCAGCAGAAACACC ---........(((.((((((..(((((((((..(((....))).)))))...--((((..........))))........))))))))))...)))............ ( -22.10, z-score = -0.82, R) >droEre2.scaffold_4770 3272881 93 - 17746568 ---CAUAUACCGCCAUUGUCUUCGCGUUAAGUGAGACAAAAGUUGACUUAAAA--UCCCAAAAACCGAAGGGAAUAACUACAUGCUGGCAAGCGCACC----------- ---........((((((((((.(((.....)))))))))..............--((((..........))))............)))).........----------- ( -20.40, z-score = -1.48, R) >droGri2.scaffold_15074 51257 82 - 7742996 -----CAGGCUGGCAUUGUCUUUAGUUUAAGCGCUAGAAAAGUUGACUUAAAAGCCCCCAAAAACCAAACC---CAAAUGAAAGUCGAUA------------------- -----..((((..(((((..(((.((((..(.(((....(((....)))...))).)....)))).)))..---).))))..))))....------------------- ( -11.30, z-score = 0.53, R) >consensus ___CAUACUCCGCCAUUGUCUUCGCGUUAAGUGAGACAAAAGUUGACUUAAAA__UCCCAAAAACCGAAGGGAAUAACUACAUGCAGGCACGCA_______________ ...........(((.((((((.(((.....)))))))))................((((..........)))).............))).................... (-12.11 = -13.50 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:56 2011