| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,140,958 – 7,141,063 |
| Length | 105 |
| Max. P | 0.811386 |
| Location | 7,140,958 – 7,141,063 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 83.73 |
| Shannon entropy | 0.27537 |
| G+C content | 0.59388 |
| Mean single sequence MFE | -19.70 |
| Consensus MFE | -17.70 |
| Energy contribution | -17.70 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.811386 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7140958 105 - 27905053 GCACAAAAAUGCACUGCCAGUUAGCCCCCCUACCCCCUGACCAUACCCCUUACCCCAUUCCACAGCCUUGUUUUGCCCGCCCAUGGCAAUGCAGUCGAGUGUGAG .((((....((((.((((((((((............))))).......................((........)).......))))).))))......)))).. ( -19.00, z-score = -1.07, R) >droSim1.chr3R 13302168 104 + 27517382 GCACAAAAAUGCACUGCCAGUUAGUCCCCCC-UCCGCUGACCACACCCCUCACCCCUUUCCGCCCCCUUGUUUUGCCCGACCAUGGCAAUGCAGUCGAGUGUGAG .((((....((((.(((((((((((......-...))))))............................(((......)))..))))).))))......)))).. ( -20.60, z-score = -1.34, R) >droSec1.super_0 6306954 104 + 21120651 GCACAAAAAUGCACUGCCAGUUAGCCCCCCC-UCUGCUGACCACACCCCUCACCCCUUUCCACCCCCUUGUUUUGCCCGCCCAUGGCAAUGCAGUCGAGUGUGAG .((((....((((.(((((((((((......-...))))))...................((......)).............))))).))))......)))).. ( -21.00, z-score = -1.47, R) >droYak2.chr3R 11176985 85 - 28832112 GCACAAAAAUGCACUGCCAGUUAGCCC---------CUGACCACACCCCUAGCCCCCCUC-----------UUUGCCCGCCCCUGGCAAUGCAGUCGAGUGUGAG .((((....((((.((((((((((...---------)))))..........((.......-----------...)).......))))).))))......)))).. ( -18.20, z-score = -1.00, R) >consensus GCACAAAAAUGCACUGCCAGUUAGCCCCCCC_UCCGCUGACCACACCCCUCACCCCUUUCCACCCCCUUGUUUUGCCCGCCCAUGGCAAUGCAGUCGAGUGUGAG .((((....((.(((((..(((((............)))))...............................(((((.......))))).)))))))..)))).. (-17.70 = -17.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:55 2011