| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,135,331 – 7,135,429 |
| Length | 98 |
| Max. P | 0.677467 |
| Location | 7,135,331 – 7,135,429 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 89.19 |
| Shannon entropy | 0.23183 |
| G+C content | 0.45932 |
| Mean single sequence MFE | -29.48 |
| Consensus MFE | -24.20 |
| Energy contribution | -26.24 |
| Covariance contribution | 2.04 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.677467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7135331 98 + 27905053 ------GCCGCAUGUUU-GUGCGCAGUUGCCGAGGUCACUAAUGUCGUAAGAUGAAUCCUUUCGGCAAAUGCCUUCAGGGUGCAAAAAUAAAACAUGCU-AACGGU------- ------(((((((((((-.(((((..(((((((((........(((....)))......)))))))))...((....)))))))......)))))))).-...)))------- ( -31.14, z-score = -1.92, R) >droSec1.super_0 6301038 98 - 21120651 ------GCCGCAUGUUU-GUGCGCAGUUGCCGAGGUCACUAAUGUCGUAAGAUGAAUCCUUUCGGCAAAUGCCUUCAGGGUGCAAAAAUAAAACAUGCU-AACGGU------- ------(((((((((((-.(((((..(((((((((........(((....)))......)))))))))...((....)))))))......)))))))).-...)))------- ( -31.14, z-score = -1.92, R) >droAna3.scaffold_13340 13006601 99 - 23697760 -----CGUCGCAUGUUU-GUGCGCAGUUGCCGAGGUCACUAAUGUCGUAAGAUGAAUCCUUUCGGCAAAUGCCUUCAGGGUGCAAAAAUAAAACAUGCU-AAACGU------- -----(((.((((((((-.(((((..(((((((((........(((....)))......)))))))))...((....)))))))......)))))))).-..))).------- ( -31.24, z-score = -2.49, R) >droYak2.chr3R 11171329 98 + 28832112 ------GCCGCAUGUUU-GUGCGCAGUUGCCGAGGUCACUAAUGUCGUAAGAUGAAUCCUUUCGGCAAAUGCCUUCAGGGUGCAAAAAUAAAACAUGCU-AACGGU------- ------(((((((((((-.(((((..(((((((((........(((....)))......)))))))))...((....)))))))......)))))))).-...)))------- ( -31.14, z-score = -1.92, R) >droSim1.chr3R 13292922 98 - 27517382 ------GCCGCAUGUUU-GUGCGCAGUUGCCGAGGUCACUAAUGUCGUAAGAUGAAUCCUUUCGGCAAAUGCCUUCAGGGUGCAAAAAUAAAACAUGCU-AACGGU------- ------(((((((((((-.(((((..(((((((((........(((....)))......)))))))))...((....)))))))......)))))))).-...)))------- ( -31.14, z-score = -1.92, R) >droPer1.super_6 1538538 97 - 6141320 ------CUUGUGU-UUU-GUGCGCAGUUGCCGAGGUCACUAAUGUCGUAAGAUGAAUCCUUUCGGCAAAUGCCUUCAGGGUGCAAAAAUAAAACAUGCU-AACGGU------- ------.(((..(-(((-(...(((.(((((((((........(((....)))......))))))))).)))...)))))..)))..............-......------- ( -25.84, z-score = -0.98, R) >dp4.chr2 1517089 97 - 30794189 ------CUUGUGU-UUU-GUGCGCAGUUGCCGAGGUCACUAAUGUCGUAAGAUGAAUCCUUUCGGCAAAUGCCUUCAGGGUGCAAAAAUAAAACAUGCU-AACGGU------- ------.(((..(-(((-(...(((.(((((((((........(((....)))......))))))))).)))...)))))..)))..............-......------- ( -25.84, z-score = -0.98, R) >droEre2.scaffold_4770 3262754 98 - 17746568 ------GCCGCAUGUUU-GUGCGCAGUUGCCGAGGUCACUAAUGUCGUAAGAUGAAUCCUUUCGGCAAAUGCCUUCAGGGUGCAAAAAUAAAACAUGCU-AACGGU------- ------(((((((((((-.(((((..(((((((((........(((....)))......)))))))))...((....)))))))......)))))))).-...)))------- ( -31.14, z-score = -1.92, R) >droWil1.scaffold_181089 8023462 113 - 12369635 GUUGUAUCCGCAUGUUUUGUGCGCAGUUGCUGAGGUCACUAAUGUCGUAAGAUGAAUCCUUUUGGCAAAUGCCUUUAGGGUGCAAAAAUAAAACAUGCUUCCCCUUCUACGGU .........((((((((((((((((((.((....)).)))...(((....)))....(((...(((....)))...))))))))....))))))))))....((......)). ( -30.80, z-score = -1.53, R) >droVir3.scaffold_13047 15876115 98 - 19223366 ------GCCGCAUGUUUCGUGCGCAGUUGGUGAGGUCACUAGUGUCGUAAGAUGAAUCCUUUUGGCAAAUGCCUUCAGGGUGCAAAAAUAAAACAAGC--AACGGC------- ------((((..((((((.((((((.((((((....)))))))).)))).))((.(((((...(((....)))...))))).))...........)))--).))))------- ( -28.80, z-score = -1.00, R) >droMoj3.scaffold_6540 13780042 97 - 34148556 ------ACCGCAUGUUUUGUGCGCAGUUGCUGAGGUCACGAAUGUCGUAAGAUGAAUCCUUUUGGCAAAUGCCUUCAGGGUGCAAAUAUAAAACAACGGCAGC---------- ------..(((((.....)))))..(((((((..((.......(((....)))(.(((((...(((....)))...))))).).........))..)))))))---------- ( -27.50, z-score = -0.67, R) >droGri2.scaffold_15074 38303 103 - 7742996 ------GCCGCAUGUUUUGUGCGCAGUUGCUGAGGUCACUAAUGUCGUAAGAUGAAUCCUUUCGGCAAAUGCCUUCAGGGUGCAAAAAUAAAACAAGCAGGAAUGUUCU---- ------.((((.((((((((((((.....((((((.((....(((((.(((.......))).)))))..)).)))))).)))))....))))))).)).))........---- ( -28.00, z-score = -0.74, R) >consensus ______GCCGCAUGUUU_GUGCGCAGUUGCCGAGGUCACUAAUGUCGUAAGAUGAAUCCUUUCGGCAAAUGCCUUCAGGGUGCAAAAAUAAAACAUGCU_AACGGU_______ .........((((((((..(((((..(((((((((........(((....)))......)))))))))...((....)))))))......))))))))............... (-24.20 = -26.24 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:05:53 2011